CB290416

Overview
NameCB290416
Unique NameCB290416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:508..1378. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290416 vs. ExPASy Swiss-Prot
Match: THI4_SULIL (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=LS215_1798 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.989e-21
Identity = 63/201 (31.34%), Postives = 99/201 (49.25%), Query Frame = -3
Query:  268 GGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 864
            GGG   G  LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:   66 GGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290416 vs. ExPASy Swiss-Prot
Match: THI4_SULIK (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1717 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.989e-21
Identity = 63/201 (31.34%), Postives = 99/201 (49.25%), Query Frame = -3
Query:  268 GGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 864
            GGG   G  LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:   66 GGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290416 vs. ExPASy Swiss-Prot
Match: THI4_SULIA (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.27) GN=M1627_1786 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.989e-21
Identity = 63/201 (31.34%), Postives = 99/201 (49.25%), Query Frame = -3
Query:  268 GGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 864
            GGG   G  LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:   66 GGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290416 vs. ExPASy Swiss-Prot
Match: THI4_METVS (Putative thiazole biosynthetic enzyme OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0663 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.431e-21
Identity = 70/207 (33.82%), Postives = 99/207 (47.83%), Query Frame = -3
Query:  262 GGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTST---IMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 864
            GGG W GG  F  +VV KPA   L   GI     D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  + AK V+ S GHD    +T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A L L+ L +
Sbjct:   65 GGGTWGGGMGFPNIVVEKPADEILRSAGIKLKSVDG-----EPELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKISGVVIQSYSIEK---AGLHVDPITISAKYVIDSTGHDASVVSTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLFVCGMTANAYHAGYRMGAIFGGMYLSGKKCAELILEKLNK 261          
BLAST of CB290416 vs. ExPASy Swiss-Prot
Match: THI4_DESOH (Putative thiazole biosynthetic enzyme OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=Dole_2426 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.431e-21
Identity = 70/205 (34.15%), Postives = 103/205 (50.24%), Query Frame = -3
Query:  268 SPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD--EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE--EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 870
            S GGG W G  LF+ +VV+K A   LD + I Y    +D Y      A+ T T  +   A+  V +FN V  ED++++  R+ G+V NW+ V M       +DP  M A  V+ + GH         K++      +  ++ G K++  + AE   +  TREV PG+ V GM      G PRMG  FG M++SG+K A   L+ L
Sbjct:   59 SIGGGMWGGAMLFNEIVVQKSALHVLDAMEIGYRLYAEDYYTADAVEAISTLTSQA---AKAGVAIFNCVTVEDVMIRPDRIVGLVLNWSPVEM---AGLHVDPLAMRASFVIDATGHATEVVHVVAKKVPGTLRTDSGKIEGEKSMWSDRAESLTLENTREVYPGLYVAGMAGNATFGGPRMGAIFGGMLLSGEKVAAEILERL 257          
BLAST of CB290416 vs. ExPASy Swiss-Prot
Match: THI4_META3 (Putative thiazole biosynthetic enzyme OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0798 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.557e-21
Identity = 60/199 (30.15%), Postives = 103/199 (51.76%), Query Frame = -3
Query:  268 GGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 864
            GGG W GG     + V+ PA   L E+GI  +E ++ + +  +    + + +  +     K+   +  ED+I+K G+V GVV N   ++        +DP  + AK V+ + GHD     T  ++ + +G++  +PG K+L  +  E+ +++ T+E+ PG+ V GM      G  RMG  FG M ISG+  A + L+ L
Sbjct:   68 GGGTWGGGMGCPYITVQSPADEILSEVGIKLEEGEDGLFVADSVEVPAKLGTGAIDA-GAKVLTGIVVEDVILKEGKVSGVVINSYAINK---AGLHIDPLTINAKYVIDATGHDASVACTLARKNEDLGLV--IPGEKSLWADEGENGLLKYTKELFPGLFVCGMASNATHGGYRMGAVFGGMYISGKIVADMILEKL 260          
BLAST of CB290416 vs. ExPASy Swiss-Prot
Match: THI4_ARCFU (Putative thiazole biosynthetic enzyme OS=Archaeoglobus fulgidus GN=AF_0702 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.289e-20
Identity = 67/204 (32.84%), Postives = 103/204 (50.49%), Query Frame = -3
Query:  268 GGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARP---NVKLFNAVAAEDLIVKGGRVG--GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 864
            GGG   GG LF  +VV + A   LD+ GI Y E  N++V   A       M+KL A+      K+ + V+ ED+I +   +G  GV   W+ V ++      +DP  + ++ VV + GHD    +   ++   I +   V G ++     AE  IV  T ++V G+   GM VA +   PRMGP FG M++SG+K A +  + L
Sbjct:   66 GGGIGGGGMLFHKVVVEREAKDILDDFGIRYTEHRNFLVADSAEF-----MAKLAAKAIDAGAKIIHGVSVEDVIFRDDPLGVRGVCIQWSAVEISG---LHVDPLFLRSRAVVDATGHDAEVISVAARK---IPLEVSVVGERSAYSEVAEREIVEKTGKIVKGLYAAGMAVAAVHNLPRMGPIFGGMLLSGKKVAEIVAEDL 258          
BLAST of CB290416 vs. ExPASy Swiss-Prot
Match: THI4_SULIN (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1140 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.684e-20
Identity = 62/201 (30.85%), Postives = 98/201 (48.76%), Query Frame = -3
Query:  268 GGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 864
            GGG   G  LF  +++ KPA   L E+ +   E +  V +  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    +   +++  +G++  + G K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:   66 GGGIGGGAMLFHKLIIEKPADEILREVNVRLKEVEEGVYVVDSAEFMAKLATAAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---ASLHVDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IAGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB290416 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.872e-20
Identity = 64/204 (31.37%), Postives = 102/204 (50.00%), Query Frame = -3
Query:  262 GGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 864
            GGG   GG +  ++VV++ A   L +  + Y    D    +  A L        + A    K+   V  +D+I +G   RV G++  W  + M+      +DP    AK V+ + GHD    +   +++  +G+  ++PG K+     +E  +V  T +V PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:   58 GGGIGPGGNMLPSIVVQEEALPILRDFKVRYQPAGDGLYTVDPAELIAKLAAGAIDA--GAKIILGVHVDDVIFRGDPPRVAGLLWIWTPIQMSG---MHVDPLYTMAKAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of CB290416 vs. ExPASy Swiss-Prot
Match: THI4_METJA (Putative thiazole biosynthetic enzyme OS=Methanocaldococcus jannaschii GN=MJ0601 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.175e-19
Identity = 68/200 (34.00%), Postives = 97/200 (48.50%), Query Frame = -3
Query:  268 GGGAWLGGQLFSAMVVRKPAHIFLDELGIDY-DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 864
            GGG W GG  F  +VV +PA   L E+GI   D  D Y V     +     ++ + A    K+   +  EDLI++   V GVV N   +         +DP  + +KVVV + GH+       VK+ K   +  +VPG K++     E+A++R TREV P + V GM      G  RMG  FG M +SG+  A L  + L
Sbjct:   68 GGGTWGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDA--GAKILTGIVVEDLILREDGVAGVVINSYAIER---AGLHIDPLTIRSKVVVDATGHEASIVNILVKKNK---LEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKL 259          
The following BLAST results are available for this feature:
BLAST of CB290416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
THI4_SULIL1.989e-2131.34Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIK1.989e-2131.34Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIA1.989e-2131.34Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METVS4.431e-2133.82Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_DESOH4.431e-2134.15Putative thiazole biosynthetic enzyme OS=Desulfoco... [more]
THI4_META37.557e-2130.15Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_ARCFU1.289e-2032.84Putative thiazole biosynthetic enzyme OS=Archaeogl... [more]
THI4_SULIN1.684e-2030.85Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_PYRAR2.872e-2031.37Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_METJA3.175e-1934.00Putative thiazole biosynthetic enzyme OS=Methanoca... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bd02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bd02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290416 ID=CB290416; Name=CB290416; organism=Citrus sinensis; type=EST; length=872bp
TTTTTTTTTTTTTTTTTGACCGGAAACAAACACTTTATTCACAAAACCTC
ACAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAAT
ACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTG
ATGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAG
CTGCAGCTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTACCGTCT
AATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTG
CCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGCACCAT
CAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCC
CTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTT
CATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTC
CAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACCTTC
GCTTCCATTACATTGGGATCCATGCAAGACTGTGTATCGTGATTCATTGA
CACCAACGCCCAGTTGGTCACCACACCACCAACTCTGCCGCCTTTGACTA
TCAAGTCCTCGGCTGCCACTGCATTAAAGAGCTTGACGTTGGGGCGGGCC
AGGAGCTTGCTCATTATAGTGGAGGTGAACAGCGCTGCATGCTTGATCAC
AACATAGTTGTCTTGCTCATCGTAGTCGATGCCAAGCTCGTCAAGGAAGA
TGTGGGCTGGTTTGCGCACAACCATGGCAGAGAAGAGCTGTCCACCGAGC
CACGCGCCACCGCCGGGGCTAA
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