CB290427

Overview
NameCB290427
Unique NameCB290427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.084e-28
Identity = 80/205 (39.02%), Postives = 113/205 (55.12%), Query Frame = 2
Query:  179 GAASSAVPGAAEKPVKFKVRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDW-SKKSNVKAERVHYTAEFLVDSN-FGTPGAITVANKHQKEFFLETITIEGFA-CGPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            G    A+ G  ++P K K R +L +KKN+  DF     +  D +++ +G+ V ++L+   V+      K S  A L+ W +  + + A    ++  F  D + FG PGA  + N H  EFFL+++T+E     G +HF CNSWV     +   RIFFANQ YLPSETP  LR  RE EL  +RG G G  +  DR+YDY  YNDL
Sbjct:    4 GGIVDAILGKDDRP-KVKGRVIL-MKKNVL-DFINIGASVVDGISDLLGQKVSIQLISGSVNYDGLEGKLSNPAYLESWLTDITPITAGESTFSVTFDWDRDEFGVPGAFIIKNLHLNEFFLKSLTLEDVPNYGKIHFVCNSWVYPAFRYKSDRIFFANQAYLPSETPQPLRKYRENELVALRGDGTGKLEEWDRVYDYACYNDL 205          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.084e-28
Identity = 79/207 (38.16%), Postives = 111/207 (53.62%), Query Frame = 2
Query:  179 GAASSAVPGAAEKPVKFKVRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKG--PKKSREAVLKD--WSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            G  +S + G  +   K K   V+ + KN+  DF +   +    + + +G+ V  +L+ +     T G   K S  A L++  ++           +   F  +  FG PGA  + N H  EFFL+++T+E     G VHF CNSWV  + ++   RIFFANQPYLPSETP  LR  RE EL  +RG G G R+  DRIYDYD+YNDL
Sbjct:    3 GQITSGLFGGHDDSKKVKGTVVM-MNKNVL-DFTDLAGSLTGKIFDVLGQKVSFQLISSVQGDPTNGLQGKHSNPAYLENSLFTLTPLTAGSETAFGVTFDWNEEFGVPGAFIIKNMHINEFFLKSLTLEDVPNHGKVHFVCNSWVYPSLNYKSDRIFFANQPYLPSETPELLRKYRENELLTLRGDGTGKREAWDRIYDYDIYNDL 207          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.415e-28
Identity = 73/164 (44.51%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  302 DALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKS--NVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            D LT  +GR+V L+L+     P   G  K  +    +    S   + A    +  +F  D + G PGA  + N  Q EF+L+++T+E     G + F CNSWV +TK +   RIFFAN  Y+PSETPA L   RE+ELK++RG GKG RK  DRIYDYDVYNDL
Sbjct:   60 DNLTAFLGRSVALQLISA-TKPLANGKGKVGKDTFLEGIIVSLPTLGAGESAFNIQFEWDESMGIPGAFYIKNYMQVEFYLKSLTLEDVPNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAALVGYREEELKNLRGDGKGERKEHDRIYDYDVYNDL 222          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.153e-28
Identity = 94/235 (40.00%), Postives = 133/235 (56.60%), Query Frame = 2
Query:  125 VRRGINNPVAALSEDLVKGAASSAVPGAAEKPVKFKVRAVLTVKKNIKEDFKETLVNQF------DALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERV-HYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIE-GFACGP---VHFQCNSWVQ--STKDHS--GKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            VR   ++  ++ SE   +G  SS +  AA      KV+AV T+K  +     E L+N        D + + IGR++ LELV +E++ +T G KK   A +  ++ K +     V  Y A+F V + FG  GA+ V N+  +E FLE + +  G   G    +  +CNSWVQ  S+ D    GKRIFFA + YLP +TPAGLR+ RE++LK  RG G G R+  DR+YDYDVYNDL
Sbjct:   66 VRCASSSAASSASEAARRGTGSSDMAPAAV----VKVKAVATIKVTV-----EGLLNSLRPSKAIDNIRDLIGRSLFLELVSSELEAKT-GKKK---ATVHSYAHKVDDDDHGVVTYEADFDVPTGFGPIGAVVVTNELGQEMFLEDLNLTAGDGAGNSTVLPIRCNSWVQPKSSIDEGTPGKRIFFA-KAYLPGQTPAGLRSYREEDLKQKRGNGAGQREADDRVYDYDVYNDL 286          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.153e-28
Identity = 77/186 (41.40%), Postives = 106/186 (56.99%), Query Frame = 2
Query:  233 VRAVLTVKKNIKEDFKETLVNQFDALTEKIGRNVVLELVG-TEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            + ++ TV   I + F + L +  D LT  +GR+V L+L+  T+ D   KG       +    S    + A +  +   F  D + G PGA  + N  Q EFFL ++T++     G ++F CNSW+ + K H   RIFFANQ YLPSETPA L   RE+EL ++RG G G RK  +RIYDYDVYNDL
Sbjct:   29 INSLTTVGGVIGQGF-DILGSTVDNLTAFLGRSVSLQLISATKPDATGKGKLGKATFLEGIISSLPTLGAGQSAFKIHFEWDDDMGIPGAFYIKNFMQTEFFLVSLTLDDIPNHGSIYFVCNSWIYNAKHHKIDRIFFANQTYLPSETPAPLVHYREEELNNLRGDGTGERKEWERIYDYDVYNDL 213          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.118e-28
Identity = 62/112 (55.36%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  452 YTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            Y   F  DS+FG PGA  + N  Q EF+L+++ +E     G +HF CNSWV ++K++   RIFFAN  YLPSETPA L   RE+ELK++RG G G RK  DRIYDYDVYNDL
Sbjct:   95 YDVNFEWDSDFGIPGAFYIKNFMQNEFYLKSLILEDIPNHGTIHFVCNSWVYNSKNYKTDRIFFANNTYLPSETPAPLLKYREEELKNVRGDGTGERKEWDRIYDYDVYNDL 206          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.118e-28
Identity = 73/164 (44.51%), Postives = 99/164 (60.37%), Query Frame = 2
Query:  302 DALTEKIGRNVVLELVG-TEVDPRTKGPKKSREAVLKD-WSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            D LT  +GR+V L+L+  T+ D   KG K  ++  L+   +    + A    +   F  D   G PGA  + N  Q EFFL+++T+E     G + F CNSWV ++K +   RIFFAN+ YLPSETP+ L   RE+EL+ +RG G G RKL +RIYDYDVYNDL
Sbjct:   56 DGLTAFLGRSVSLQLISATKSDANGKG-KVGKDTFLEGVLASLPTLGAGESAFNIHFEWDHEMGIPGAFYIKNYMQVEFFLKSLTLEDVPNHGTIRFVCNSWVYNSKLYKSPRIFFANKSYLPSETPSPLVKYREEELQTLRGDGTGERKLHERIYDYDVYNDL 218          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.044e-27
Identity = 68/163 (41.72%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  302 DALTEKIGRNVVLELVG-TEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            D  T    RN+ ++L+  T+ D    G    +  + K      N+   +  +   F  D NFG P A  + N  Q EFFL ++T+E     G +HF CNSWV + K +   RIFFAN+ YLP+ETPA L   R++EL+++RG G G RK  DRIYDY VYNDL
Sbjct:   56 DGATAIFSRNIAIQLISATKTDGLGNGKVGKQTFLEKHLPSLPNLGDRQDAFNVYFEWDENFGIPEAFYIKNFMQSEFFLVSLTLEDIPNHGTIHFVCNSWVYNAKSYKRDRIFFANKTYLPNETPASLVKYRKEELENLRGDGTGERKEYDRIYDYAVYNDL 218          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.669e-27
Identity = 71/164 (43.29%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  302 DALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVH-YTAEFLVDSNFGTPGAITVANKHQK-EFFLETITIEGFA-CGPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            D  T  +GR+V L L+   V   +   K S+EA L+          ++   ++  F  DSN GTPGA  + N  Q  EFFL ++T++     G + F CNSW+ + K +   RIFFAN+ YLPS TPA L + R++ELK +RG G G R+  DRIYDYDVYNDL
Sbjct:   55 DTATAFLGRSVRLRLISATVADASGKGKVSKEAFLEGLLTSIPTLGDKQSAFSVHFEWDSNMGTPGAFYIENFMQGGEFFLVSLTLDDVPNVGSIKFACNSWIYNDKKYQSDRIFFANKTYLPSATPAPLVSYRQEELKTLRGDGTGERQEWDRIYDYDVYNDL 218          
BLAST of CB290427 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.854e-26
Identity = 70/163 (42.94%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  302 DALTEKIGRNVVLELVG-TEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHSGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDL 784
            D LT  +GR V L+L+  T+ D   KG       +    +    + A +  +   F  D   G  GA  + N  Q EFFL ++T+E     G +HF CNSW+ + K     RIFFANQ YLPSETPA L   RE+EL ++RG G G RK  +R+YDYDVYNDL
Sbjct:   48 DTLTAFLGRPVSLQLISATKADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWDDGSGILGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERVYDYDVYNDL 210          
The following BLAST results are available for this feature:
BLAST of CB290427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOXB_SOLLC1.084e-2839.02Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX1_SOLTU1.084e-2838.16Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX2_SOYBN1.415e-2844.51Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOXC2_ORYSJ3.153e-2840.00Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX3_PEA3.153e-2841.40Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX4_SOYBN4.118e-2855.36Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX2_PEA4.118e-2844.51Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOXA_PHAVU2.044e-2741.72Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX1_LENCU2.669e-2743.29Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOX3_SOYBN3.854e-2642.94Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bd08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290427 ID=CB290427; Name=CB290427; organism=Citrus sinensis; type=EST; length=786bp
GCACGTGGCAAAAGTGCTTTTAAACCAAAGTACTTTTTGGCAAAACAAGC
TGCTGCAACAAAAGCAGTTTTTGGTACCCGTGCAACAGAGAAGAGTGCAT
TCGAGGAAAGCAGGAGCAGCAGGTGTGAGGAGGGGGATTAATAATCCTGT
GGCTGCTCTAAGTGAAGATTTGGTAAAAGGAGCTGCTTCCTCTGCCGTGC
CCGGGGCTGCTGAAAAGCCAGTGAAGTTTAAGGTGAGGGCTGTGCTGACG
GTGAAGAAGAACATCAAAGAAGATTTCAAAGAGACCCTTGTTAATCAGTT
TGATGCTTTAACTGAAAAGATTGGCAGAAATGTCGTTCTGGAACTTGTCG
GCACTGAAGTTGATCCCAGAACAAAGGGACCAAAGAAAAGCAGAGAAGCA
GTTCTGAAGGATTGGTCAAAGAAATCAAATGTTAAGGCTGAACGGGTCCA
TTACACGGCTGAATTTTTAGTGGACTCAAATTTTGGGACGCCTGGTGCAA
TCACAGTTGCCAATAAGCACCAAAAGGAATTCTTTTTGGAAACTATTACC
ATTGAAGGTTTTGCTTGTGGCCCTGTTCATTTCCAATGCAATTCTTGGGT
TCAATCCACAAAAGATCATTCTGGAAAAAGGATATTCTTCGCTAATCAGC
CATATTTACCGAGTGAGACGCCAGCTGGGCTTAGAGCACTAAGGGAGAAA
GAGCTCAAAGACATTAGAGGCACAGGCAAAGGAGTTAGAAAATTATCGGA
CAGAATTTATGACTATGATGTGTACAATGATCTGGG
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