CB290428 | Citrus Genome Database

Overview


Name	CB290428
Unique Name	CB290428
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	611

Libraries


Library Name	Type
Washington Navel orange cold acclimated flavedo & albedo cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H31_RAT (Histone H3.1 OS=Rattus norvegicus PE=1 SV=3)

HSP 1 Score: 252.677 bits (644), Expect = 1.096e-66
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = -2

Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H31_MUSPA (Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3)

HSP 1 Score: 252.677 bits (644), Expect = 1.096e-66
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = -2

Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H31_MOUSE (Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.096e-66
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = -2

Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.096e-66
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = -2

Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.096e-66
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = -2

Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H3L3_ARATH (Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g75600 PE=2 SV=3)

HSP 1 Score: 252.292 bits (643), Expect = 1.431e-66
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = -2

Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKS GGKAPR  LATKAARK APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 136

[Close]

BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H32_WHEAT (Histone H3.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.431e-66
Identity = 130/136 (95.59%), Postives = 131/136 (96.32%), Query Frame = -2

Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK AP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H32_PEA (Histone H3.2 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.431e-66
Identity = 130/136 (95.59%), Postives = 131/136 (96.32%), Query Frame = -2

Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK AP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.431e-66
Identity = 130/136 (95.59%), Postives = 131/136 (96.32%), Query Frame = -2

Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK AP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H32_MEDSA (Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.431e-66
Identity = 130/136 (95.59%), Postives = 131/136 (96.32%), Query Frame = -2

Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK AP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of CB290428 vs. ExPASy Swiss-Prot

BLAST of CB290428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211


Match Name	E-value	Identity	Description
H31_RAT	1.096e-66	94.85	Histone H3.1 OS=Rattus norvegicus PE=1 SV=3	[more]
H31_MUSPA	1.096e-66	94.85	Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3	[more]
H31_MOUSE	1.096e-66	94.85	Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2	[more]
H31_HUMAN	1.096e-66	94.85	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	[more]
H31_BOVIN	1.096e-66	94.85	Histone H3.1 OS=Bos taurus PE=1 SV=2	[more]
H3L3_ARATH	1.431e-66	94.85	Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g7...	[more]
H32_WHEAT	1.431e-66	95.59	Histone H3.2 OS=Triticum aestivum PE=1 SV=2	[more]
H32_PEA	1.431e-66	95.59	Histone H3.2 OS=Pisum sativum PE=1 SV=2	[more]
H32_ONOVI	1.431e-66	95.59	Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2	[more]
H32_MEDSA	1.431e-66	95.59	Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS01_01bd09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bd09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB290428 ID=CB290428; Name=CB290428; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTATCCAACAAATATCAAATCCCAAATATTCTTCA
ATCCATCATATCATTCTTTACATGGAAAAACCGGAATAAAGAAAAACTAG
CAAACTAAATAGGAAACTGACGACTACATAAGGAATCACAAATTAAGCAC
GCTCGCCTCGGATTCGCCTTGCCAGTTGAATATCCTTGGGCATAATGGGG
ACTCGCTTGGCATGGATAGCACAAAGGTTGGTGTCCTCGAACAGACCCAC
GAGATAAGCCTCTGCCGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGA
ACCTCAAATCTGTCTTGAAATCTTGAGCAATTTCACGAACCAGCCGCTGA
AAAGGCAGCTTGCGGATCAAAAGCTCAGTGCTCTTCTGATATTTGCGGAT
TTCACGGAGGGCGACAGTTCCTGGACGGTAACGATGAGGCTTCTTGACTC
CACCAGTTGTTGGAGCAAATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTC
CTCGGAGCCTTTCCTCCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGC
CATTACTCTTTAATCACCAACACAAACTGCAAAATGCACAGATCTGAATG
CAACCCTCGTG