CB290428

Overview
NameCB290428
Unique NameCB290428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3)

HSP 1 Score: 243.817 bits (621), Expect = 5.091e-64
Identity = 126/137 (91.97%), Postives = 130/137 (94.89%), Query Frame = -2
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPT-TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKAARK  PT  GG+K+P RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQE AEAYLVG+FEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSIPTGMGGMKRPRRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEGAEAYLVGIFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137          
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H3L5_ARATH (Putative histone H3-like 5 OS=Arabidopsis thaliana GN=At5g65350 PE=5 SV=3)

HSP 1 Score: 242.276 bits (617), Expect = 1.481e-63
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = -2
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTAR STGGKAPRKQLA KAAR+ AP TGGVKKPHR+RPGTVALR+IRKYQKSTE+LIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRV IMPK+IQLARRIRGERA
Sbjct:    1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTEILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKEIQLARRIRGERA 136          
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 3.300e-63
Identity = 124/136 (91.18%), Postives = 127/136 (93.38%), Query Frame = -2
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLATKA    A  TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEA+EAYLVGLFEDTNLCAIHAKRV IMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136          
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 9.600e-63
Identity = 121/136 (88.97%), Postives = 127/136 (93.38%), Query Frame = -2
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLA+KAARK AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLV LFEDTNLCAIH KRV I PKD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H32_USTMA (Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 1.254e-62
Identity = 122/135 (90.37%), Postives = 127/135 (94.07%), Query Frame = -2
Query:  149 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGER 553
            MARTKQTARKSTGGKAPRKQLATKAARK AP+ GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE+AEAYLV LFEDTNL AIHAKRV I PKDI LARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQESAEAYLVSLFEDTNLAAIHAKRVTIQPKDIALARRLRGER 135          
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.254e-62
Identity = 121/136 (88.97%), Postives = 129/136 (94.85%), Query Frame = -2
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLA+KAARK AP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRV I  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.638e-62
Identity = 124/136 (91.18%), Postives = 128/136 (94.12%), Query Frame = -2
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRK +ATKA RK AP  GGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKAVATKA-RKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 2.139e-62
Identity = 122/135 (90.37%), Postives = 126/135 (93.33%), Query Frame = -2
Query:  149 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGER 553
            MARTKQTARKSTGGKAPRKQLATKAARK AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLV LFEDTNL AIHAKRV I PKDI LARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDIHLARRLRGER 135          
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 2.793e-62
Identity = 120/136 (88.24%), Postives = 129/136 (94.85%), Query Frame = -2
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLA+KAARK AP+TGGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRV I  KD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRGERS 136          
BLAST of CB290428 vs. ExPASy Swiss-Prot
Match: H33_SCHPO (Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 8.127e-62
Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = -2
Query:  146 MARTKQTARKSTGGKAPRKQLATKAARKFAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVPIMPKDIQLARRIRGERA 553
            MARTKQTARKSTGGKAPRKQLA+KAARK AP TGGVKKPHRYRP TVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLV LFEDTNLCAIH KRV I PKD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPPTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
The following BLAST results are available for this feature:
BLAST of CB290428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33B_LILLO5.091e-6491.97Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2... [more]
H3L5_ARATH1.481e-6391.18Putative histone H3-like 5 OS=Arabidopsis thaliana... [more]
H32_CICIN3.300e-6391.18Histone H3.2 OS=Cichorium intybus PE=2 SV=3[more]
H31_SCHPO9.600e-6388.97Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H32_USTMA1.254e-6290.37Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3[more]
H31_LODEL1.254e-6288.97Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]
H3_MASBA1.638e-6291.18Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1[more]
H3_MORAP2.139e-6290.37Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H31_CANAL2.793e-6288.24Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3... [more]
H33_SCHPO8.127e-6288.24Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bd09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290428 ID=CB290428; Name=CB290428; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTATCCAACAAATATCAAATCCCAAATATTCTTCA
ATCCATCATATCATTCTTTACATGGAAAAACCGGAATAAAGAAAAACTAG
CAAACTAAATAGGAAACTGACGACTACATAAGGAATCACAAATTAAGCAC
GCTCGCCTCGGATTCGCCTTGCCAGTTGAATATCCTTGGGCATAATGGGG
ACTCGCTTGGCATGGATAGCACAAAGGTTGGTGTCCTCGAACAGACCCAC
GAGATAAGCCTCTGCCGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGA
ACCTCAAATCTGTCTTGAAATCTTGAGCAATTTCACGAACCAGCCGCTGA
AAAGGCAGCTTGCGGATCAAAAGCTCAGTGCTCTTCTGATATTTGCGGAT
TTCACGGAGGGCGACAGTTCCTGGACGGTAACGATGAGGCTTCTTGACTC
CACCAGTTGTTGGAGCAAATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTC
CTCGGAGCCTTTCCTCCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGC
CATTACTCTTTAATCACCAACACAAACTGCAAAATGCACAGATCTGAATG
CAACCCTCGTG
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