CB290429

Overview
NameCB290429
Unique NameCB290429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H33_TETTH (Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 9.143e-61
Identity = 116/135 (85.93%), Postives = 128/135 (94.81%), Query Frame = 3
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 464
            MARTKQTARKSTG KAPRKQLATKAARKSAP +GGVKKPH++RPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K+D+RFQS A+LALQEAAEAYLVGLFEDTNLCAIHA+RVTIM KD+ LARRIRGER
Sbjct:    1 MARTKQTARKSTGVKAPRKQLATKAARKSAPVSGGVKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGER 135          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H34_TETTH (Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.841e-59
Identity = 113/135 (83.70%), Postives = 126/135 (93.33%), Query Frame = 3
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 464
            MARTKQTARKST  KAPRKQLA KAARKSAP +GG+KKPH++RPGTVALREIRKYQK+T+LLIRKLPFQRLVR+IA + K+D+RFQS A+LALQEAAEAYLVGLFEDTNLCAIHA+RVTIM KD+ LARRIRGER
Sbjct:    1 MARTKQTARKSTSIKAPRKQLAAKAARKSAPISGGIKKPHKFRPGTVALREIRKYQKTTDLLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGER 135          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H33B_DICDI (Histone H3.3 type b OS=Dictyostelium discoideum GN=H3b PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.236e-57
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 3
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 467
            MARTKQTARKSTG K PRK L  K+++KS P+T G+KK HR+RPGTVALREIR+YQKS+ELLI+KLPFQRLVREIAQ+FKTDLRFQ+ A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGAKVPRKHLGNKSSQKSFPSTQGLKKTHRFRPGTVALREIRRYQKSSELLIKKLPFQRLVREIAQEFKTDLRFQAAAIQALQEASEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLARRIRGERA 136          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H33A_DICDI (Histone H3.3 type a OS=Dictyostelium discoideum GN=H3a PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.108e-57
Identity = 114/139 (82.01%), Postives = 124/139 (89.21%), Query Frame = 3
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAP---TTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 467
            MARTKQTARKSTG K PRK + +K A K  P   ++GGVKK HR+RPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQ+FKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDI LARRIRGER+
Sbjct:    1 MARTKQTARKSTGAKVPRKHIGSKQAHKQTPVSSSSGGVKKVHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQEFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHLARRIRGERS 139          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H3_YARLI (Histone H3 OS=Yarrowia lipolytica GN=HHT1 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.975e-56
Identity = 115/139 (82.73%), Postives = 123/139 (88.49%), Query Frame = 3
Query:   60 MARTKQT--ARKSTGGKAPRKQLATKAARKSAP---TTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 461
            MARTK T  ARK TGGKAPRKQ+ +KAARKSA    T+GGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI  KDI LARR+RGE
Sbjct:    1 MARTKSTVIARKVTGGKAPRKQIGSKAARKSAAPSNTSGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIHLARRLRGE 139          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H33C_DICDI (Histone H3.3 type c OS=Dictyostelium discoideum GN=H3c PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.670e-54
Identity = 108/136 (79.41%), Postives = 121/136 (88.97%), Query Frame = 3
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 467
            MARTKQTARKSTG K PRK L++K++  S P    +KK HR+RPGTVALREIR+YQKS++LLI+KLPFQRLVREIAQ+FKTDLRFQ+ A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGAKVPRKHLSSKSSFPSKPVNEVLKKTHRFRPGTVALREIRRYQKSSDLLIKKLPFQRLVREIAQEFKTDLRFQAAAIEALQEATEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLARRIRGERA 136          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H3L_MOUSE (Putative histone H3-like OS=Mus musculus PE=5 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.414e-53
Identity = 112/136 (82.35%), Postives = 119/136 (87.50%), Query Frame = 3
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 467
            MA TKQTARKST GKAPRKQLATKAA KSAP+TGGVKK HRYRP TVAL EIR+Y  STELLI KLPFQRLV+EIAQDFKTDLRFQS A+ ALQEA+EA  VGLFEDTNLCAIHAK VT++PKDIQLA  I GERA
Sbjct:    1 MAHTKQTARKSTCGKAPRKQLATKAAXKSAPSTGGVKKSHRYRPDTVALLEIRRYH-STELLIHKLPFQRLVQEIAQDFKTDLRFQSAAIGALQEASEANRVGLFEDTNLCAIHAKCVTVIPKDIQLAHSILGERA 135          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H33L3_CAEEL (Putative histone H3.3-like type 3 OS=Caenorhabditis elegans GN=his-69 PE=5 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.414e-53
Identity = 105/123 (85.37%), Postives = 114/123 (92.68%), Query Frame = 3
Query:   96 GGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 464
            GGKAPRKQLATKAARK+A   G VKKPHR+RPGTVALREIR+YQKST+LL+RKLPFQRLVREIAQD K DLRFQS A+ ALQEA+E +LVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER
Sbjct:    4 GGKAPRKQLATKAARKNAIVVGAVKKPHRFRPGTVALREIRRYQKSTDLLLRKLPFQRLVREIAQDVKQDLRFQSAAIQALQEASEYFLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGER 126          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H3_GUITH (Histone H3 OS=Guillardia theta PE=3 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.049e-48
Identity = 100/134 (74.63%), Postives = 113/134 (84.33%), Query Frame = 3
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 461
            MARTKQTARK+ GG     +++ K A+        +KK HRY+PGTVALREIRKYQKST LLIRKLPFQRLVRE+AQD+K+DLRFQ+ AVLALQEA+E+YLV LFEDTNLCAIHAKRVTIMPKDI LARRIRGE
Sbjct:    1 MARTKQTARKTVGGDI-NSRISEKRAKSDNSKNIDLKKVHRYKPGTVALREIRKYQKSTNLLIRKLPFQRLVRELAQDYKSDLRFQNSAVLALQEASESYLVNLFEDTNLCAIHAKRVTIMPKDIYLARRIRGE 133          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H34_STYLE (Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H3-4 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.369e-48
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 3
Query:   93 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 425
            TG KAPRK LA KAARK+AP  GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIA D+K+DLRFQS AV A+QEAAEAY+VGLFEDTNLCAIHA RVTIMP
Sbjct:    2 TGAKAPRKALANKAARKTAPADGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIASDYKSDLRFQSSAVAAIQEAAEAYMVGLFEDTNLCAIHAGRVTIMP 112          
The following BLAST results are available for this feature:
BLAST of CB290429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H33_TETTH9.143e-6185.93Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE... [more]
H34_TETTH3.841e-5983.70Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE... [more]
H33B_DICDI1.236e-5782.35Histone H3.3 type b OS=Dictyostelium discoideum GN... [more]
H33A_DICDI2.108e-5782.01Histone H3.3 type a OS=Dictyostelium discoideum GN... [more]
H3_YARLI3.975e-5682.73Histone H3 OS=Yarrowia lipolytica GN=HHT1 PE=3 SV=... [more]
H33C_DICDI1.670e-5479.41Histone H3.3 type c OS=Dictyostelium discoideum GN... [more]
H3L_MOUSE1.414e-5382.35Putative histone H3-like OS=Mus musculus PE=5 SV=2[more]
H33L3_CAEEL1.414e-5385.37Putative histone H3.3-like type 3 OS=Caenorhabditi... [more]
H3_GUITH1.049e-4874.63Histone H3 OS=Guillardia theta PE=3 SV=3[more]
H34_STYLE1.369e-4886.49Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290429 ID=CB290429; Name=CB290429; organism=Citrus sinensis; type=EST; length=622bp
GCACTAGGGTTGCATTCAGATCTGTGCATTTTGCAGTTTGTGTTGGTGAT
TAAAGAGTAATGGCCCGTACGAAGCAAACCGCGCGCAAGTCAACTGGAGG
AAAGGCTCCGAGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTC
CAACAACTGGTGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTGTC
GCCCTCCGTGAAATCCGCAAATATCAGAAGAGCACTGAGCTTTTGATCCG
CAAGCTGCCTTTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGA
CAGATTTGAGGTTCCAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGGCA
GAGGCTTATCTCGTGGGTCTGTTCGAGGACACCAACCTTTGTGCTATCCA
TGCCAAGCGAGTCACCATTATGCCCAAGGATATTCAACTGGCAAGGCGAA
TCCGAGGCGAGCGTGCTTAATTTGTGATTCCTTATGTAGTCGTCAGTTTC
CTATTTAGTTTGCTAGTTTTTCTTTATTCCGGTTTTTACATGTAAAGAAT
GATATGATGGATTGAAGAATATTTGGAATTTGATATTTGTTAGATAAACA
AAAGGAAACCAAATCAAAATAA
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