CB290429

Overview
NameCB290429
Unique NameCB290429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_SCHPO (Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe GN=cnp1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 72/99 (72.73%), Postives = 84/99 (84.85%), Query Frame = 3
Query:  180 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458
            RYRPGT ALREIRKYQ+ST+LLI++LPF R+VREI+ +F     TD  LR+QS A+  LQEAAEA+LV LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct:   21 RYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H3L_ENCCU (Histone H3-like protein OS=Encephalitozoon cuniculi GN=ECU09_0450 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.859e-31
Identity = 71/135 (52.59%), Postives = 97/135 (71.85%), Query Frame = 3
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTG---GVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 455
            M+RTKQTA K+ GGKAPRK ++ K    S P++G    + K  R++ G +AL+EIRKYQKST+LLIRK PFQR+VR++ +  +  +RFQ+ A++A QEA E +L  L ED   C +HAKRVT+MPKDI L  +I+
Sbjct:    1 MSRTKQTASKALGGKAPRKGISAK----SIPSSGCSPAMPKRTRFKAGALALKEIRKYQKSTDLLIRKRPFQRMVRDLCKG-REGVRFQASAIVAFQEAVENFLTSLMEDAYRCVLHAKRVTLMPKDICLVYKIK 130          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_YARLI (Histone H3-like centromeric protein CSE4 OS=Yarrowia lipolytica GN=CSE4 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.859e-31
Identity = 75/125 (60.00%), Postives = 91/125 (72.80%), Query Frame = 3
Query:   96 GGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT----DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458
            GG  P  Q       +   TT  + KP RY+PG  AL+EIR+YQ+ TELLI KLPF R+VRE+A ++      +L++QS A+LALQEAAEA+LV LFED NLCAIHAKRVTIM KD+QLARRIRG
Sbjct:   21 GGLHPLGQTRKTLPGERRDTTQKITKP-RYKPGQKALKEIRRYQRGTELLIAKLPFARVVREVALNYLGSEYGNLQWQSMALLALQEAAEAFLVHLFEDVNLCAIHAKRVTIMQKDMQLARRIRG 144          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_YEAST (Histone H3-like centromeric protein CSE4 OS=Saccharomyces cerevisiae GN=CSE4 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.410e-29
Identity = 64/97 (65.98%), Postives = 80/97 (82.47%), Query Frame = 3
Query:  180 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 461
            +Y P  +AL EIRKYQ+ST+LLI K+PF RLV+E+  +F T   DLR+QS A++ALQEA+EAYLVGL E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:  131 KYTPSELALYEIRKYQRSTDLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 227          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_KLULA (Histone H3-like centromeric protein CSE4 OS=Kluyveromyces lactis GN=CSE4 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.056e-28
Identity = 63/97 (64.95%), Postives = 80/97 (82.47%), Query Frame = 3
Query:  180 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 461
            RY+P  +AL EIRKYQ+ST+LLI ++PF RLV+E+   F T+   LR+QS A++ALQEA+EAYLVGL E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:   86 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIRGQ 182          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_XENTR (Histone H3-like centromeric protein A OS=Xenopus tropicalis GN=cenpa PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.685e-28
Identity = 74/138 (53.62%), Postives = 92/138 (66.67%), Query Frame = 3
Query:   54 RVMARTKQTARKSTGG-KAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF--QSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458
            RV      T+ +S G   AP ++ A +A  K            R+RPGT AL EIRKYQKSTELLIRK PF RLVRE+   +   L +  QS A++ALQEA+EA+LV LFED+ LC++HAKRVT+  +DIQLARRIRG
Sbjct:   18 RVSPPLPTTSTRSPGRPSAPEQRKAPRATPKK-----------RFRPGTRALMEIRKYQKSTELLIRKAPFSRLVREVCMTYACGLNYSWQSMALMALQEASEAFLVRLFEDSYLCSLHAKRVTLYVQDIQLARRIRG 144          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_KLUMA (Histone H3-like centromeric protein CSE4 OS=Kluyveromyces marxianus GN=CSE4 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.685e-28
Identity = 62/97 (63.92%), Postives = 80/97 (82.47%), Query Frame = 3
Query:  180 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 461
            +Y+P  +AL EIRKYQ+ST+LLI ++PF RLV+E+   F +D   LR+QS A++ALQEA+EAYLVGL E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:   94 KYKPSDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFASDEEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIRGQ 190          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_XENLA (Histone H3-like centromeric protein A OS=Xenopus laevis GN=cenpa PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.580e-28
Identity = 71/124 (57.26%), Postives = 88/124 (70.97%), Query Frame = 3
Query:   93 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF--QSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458
            T  + P  Q   +A+R S       KK  R+RPGT AL EIRKYQKSTELLIRK PF RLVRE+   +   + +  QS A++ALQEA+EA+LV LFED+ LC++HAKRVT+  +DIQLARRIRG
Sbjct:   29 TSPRRPHAQQQRRASRASP------KK--RFRPGTRALMEIRKYQKSTELLIRKAPFSRLVREVCMTYACGMNYNWQSMALMALQEASEAFLVRLFEDSYLCSLHAKRVTLYVQDIQLARRIRG 144          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_CANGA (Histone H3-like centromeric protein CSE4 OS=Candida glabrata GN=CSE4 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.740e-27
Identity = 61/101 (60.40%), Postives = 80/101 (79.21%), Query Frame = 3
Query:  168 KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 461
            K+   + P  +A+ EI KYQ+ST LLI+K+PF +LV+E+ ++F     DLR+QS A+LALQEA+EAYLVGL E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:  138 KEKRNFAPSKLAMYEIEKYQRSTALLIQKIPFAKLVKEVTEEFAGESQDLRWQSMAILALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 238          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_SACSE (Histone H3-like centromeric protein CSE4 OS=Saccharomyces servazzii GN=CSE4 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.877e-27
Identity = 62/101 (61.39%), Postives = 79/101 (78.22%), Query Frame = 3
Query:  168 KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 461
            K   RYRP  +AL EIRKYQ+ST+LLI K+PF RLV+E+  +F  +   L++ S A+LALQEA+EAYLVGL E  NL A+HAKR+T+M KD+QLARRIRG+
Sbjct:  191 KTATRYRPSDLALYEIRKYQQSTDLLISKIPFARLVKEVTDNFILENQHLQWHSMAILALQEASEAYLVGLLEHANLLALHAKRITLMKKDVQLARRIRGQ 291          
The following BLAST results are available for this feature:
BLAST of CB290429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
CENPA_SCHPO1.987e-3172.73Histone H3-like centromeric protein cnp1 OS=Schizo... [more]
H3L_ENCCU9.859e-3152.59Histone H3-like protein OS=Encephalitozoon cunicul... [more]
CENPA_YARLI9.859e-3160.00Histone H3-like centromeric protein CSE4 OS=Yarrow... [more]
CENPA_YEAST5.410e-2965.98Histone H3-like centromeric protein CSE4 OS=Saccha... [more]
CENPA_KLULA2.056e-2864.95Histone H3-like centromeric protein CSE4 OS=Kluyve... [more]
CENPA_XENTR2.685e-2853.62Histone H3-like centromeric protein A OS=Xenopus t... [more]
CENPA_KLUMA2.685e-2863.92Histone H3-like centromeric protein CSE4 OS=Kluyve... [more]
CENPA_XENLA4.580e-2857.26Histone H3-like centromeric protein A OS=Xenopus l... [more]
CENPA_CANGA1.740e-2760.40Histone H3-like centromeric protein CSE4 OS=Candid... [more]
CENPA_SACSE3.877e-2761.39Histone H3-like centromeric protein CSE4 OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290429 ID=CB290429; Name=CB290429; organism=Citrus sinensis; type=EST; length=622bp
GCACTAGGGTTGCATTCAGATCTGTGCATTTTGCAGTTTGTGTTGGTGAT
TAAAGAGTAATGGCCCGTACGAAGCAAACCGCGCGCAAGTCAACTGGAGG
AAAGGCTCCGAGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTC
CAACAACTGGTGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTGTC
GCCCTCCGTGAAATCCGCAAATATCAGAAGAGCACTGAGCTTTTGATCCG
CAAGCTGCCTTTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGA
CAGATTTGAGGTTCCAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGGCA
GAGGCTTATCTCGTGGGTCTGTTCGAGGACACCAACCTTTGTGCTATCCA
TGCCAAGCGAGTCACCATTATGCCCAAGGATATTCAACTGGCAAGGCGAA
TCCGAGGCGAGCGTGCTTAATTTGTGATTCCTTATGTAGTCGTCAGTTTC
CTATTTAGTTTGCTAGTTTTTCTTTATTCCGGTTTTTACATGTAAAGAAT
GATATGATGGATTGAAGAATATTTGGAATTTGATATTTGTTAGATAAACA
AAAGGAAACCAAATCAAAATAA
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