CB290429
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_CHICK (Histone H3-like centromeric protein A OS=Gallus gallus GN=CENPA PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.282e-26 Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 3 Query: 171 KPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458 + RYRPG ALREIR+YQ ST LL+R+ PF R+VREI F D R+Q+ A+LALQEAAEA+LV L ED LC++HA+RVT+ PKD+QLARR+RG Sbjct: 28 RARRYRPGQRALREIRRYQSSTALLLRRQPFARVVREICLLFTRGVDYRWQAMALLALQEAAEAFLVHLLEDAYLCSLHARRVTLYPKDLQLARRLRG 125
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_HUMAN (Histone H3-like centromeric protein A OS=Homo sapiens GN=CENPA PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25 Identity = 70/132 (53.03%), Postives = 84/132 (63.64%), Query Frame = 3 Query: 84 RKSTGGKAPRKQ----LATKAARKSAPTTGGVKKPH-RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458 R+S +APR++ T + P+ G H R R G L+EIRK QKST LLIRKLPF RL REI F D +Q+ A+LALQEAAEA+LV LFED L +HA RVT+ PKD+QLARRIRG Sbjct: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 134
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_CRIGR (Histone H3-like centromeric protein A OS=Cricetulus griseus GN=CENPA PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 8.084e-25 Identity = 67/123 (54.47%), Postives = 84/123 (68.29%), Query Frame = 3 Query: 108 PRKQLATKAARKSAPTTGGVKKPHRYRPGT----VALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458 PR++ T R S+P G ++ R PG + L+EI+K Q+ST+LL+RKLPF R+VREI F DL +Q+ A+LALQEAAEA+LV LFED L +HA RVTI PKDIQL RRIRG Sbjct: 3 PRRKPRTPRRRPSSPVPGPSRRSSR--PGKRRKFLWLKEIKKLQRSTDLLLRKLPFSRVVREICGKFTRGVDLCWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTIFPKDIQLTRRIRG 123
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: HTR12_ARATH (Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=2 SV=3) HSP 1 Score: 110.923 bits (276), Expect = 5.240e-24 Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 3 Query: 69 TKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL--RFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 461 T+QT ++ R+ K +R++ P G KK +RYRPGTVAL+EIR +QK T LLI F R VR I R+ + A++ALQEAAE YLVGLF D+ LCAIHA+RVT+M KD +LARR+ G+ Sbjct: 45 TQQTNPTTSPATGTRR--GAKRSRQAMPR-GSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLMRKDFELARRLGGK 174
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_BOVIN (Histone H3-like centromeric protein A OS=Bos taurus GN=CENPA PE=1 SV=3) HSP 1 Score: 110.538 bits (275), Expect = 6.844e-24 Identity = 68/137 (49.64%), Postives = 84/137 (61.31%), Query Frame = 3 Query: 54 RVMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458 R R +T R+ AP AA + P+ G +P R TV L+EIR QK+T LL+RK PF RL REI F D +Q+ A+LALQEAAEA+LV LFED L ++HA RVT+ PKD+QLARRIRG Sbjct: 4 RRQKRKPETPRRRPASPAP-------AAPRPTPSLGTSSRPLARRRHTV-LKEIRTLQKTTHLLLRKSPFCRLAREICVQFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLSLHAGRVTLFPKDVQLARRIRG 132
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: HCP3_CAEEL (Histone H3-like centromeric protein hcp-3 OS=Caenorhabditis elegans GN=hcp-3 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.938e-24 Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 3 Query: 165 VKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD---FKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 452 V K RYRPG AL EIRKYQK+ +LLI+K PF RLVREI Q F D R +S A+ ALQEAAEA+LV +FE ++L + HAKRVT+M DIQL RR+ Sbjct: 185 VTKTRRYRPGQKALEEIRKYQKTEDLLIQKAPFARLVREIMQTSTPFGADCRIRSDAISALQEAAEAFLVEMFEGSSLISTHAKRVTLMTTDIQLYRRL 283
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_TETTH (Histone H3-like centromeric protein CNA1 OS=Tetrahymena thermophila GN=CNA1 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23 Identity = 58/123 (47.15%), Postives = 82/123 (66.67%), Query Frame = 3 Query: 111 RKQLATKAARKSAPT---TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD--LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 464 R + +TK R+S+ + K R+RPG AL+++R+Y ++ LLIRKLPFQRL+REI+ + LR+ S A++ LQ E Y+V FED N CA+HAKRVT+M KD+ LA RIRG++ Sbjct: 54 RNKASTKKKRESSGEKYESARDKVIRRFRPGDNALKQLRQYNQTPSLLIRKLPFQRLIREISTRMTEEDSLRWTSFALVLLQTVVEDYMVSFFEDANACALHAKRVTLMSKDLALAARIRGQK 176
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_MOUSE (Histone H3-like centromeric protein A OS=Mus musculus GN=Cenpa PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22 Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 3 Query: 108 PRKQLATKAARKSAPTTGGVKKPH-------RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458 PR++ T R S+P G ++ R R + L+EI+ QKST+LL RK PF +VREI + F D +Q+ A+LALQEAAEA+L+ LFED L ++HA RVT+ PKDIQL RRIRG Sbjct: 3 PRRKPQTPRRRPSSPAPGPSRQSSSVGSQTLRRRQKFMWLKEIKTLQKSTDLLFRKKPFSMVVREICEKFSRGVDFWWQAQALLALQEAAEAFLIHLFEDAYLLSLHAGRVTLFPKDIQLTRRIRG 128
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEBR (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis briggsae GN=cpar-1 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21 Identity = 58/101 (57.43%), Postives = 75/101 (74.26%), Query Frame = 3 Query: 165 VKKPH--RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIA--QDFKT-DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 452 V K H ++RPG AL EIRKYQKST++LI+K PF RLV EI Q +K+ D R ++ A++ALQEAAEA++V +FE + L HAKRVT+MP DIQL RR+ Sbjct: 239 VTKTHNRKFRPGQKALAEIRKYQKSTDMLIQKAPFVRLVHEIIREQTYKSQDYRIRADALMALQEAAEAFMVEMFEGSVLICNHAKRVTLMPTDIQLYRRL 339
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEEL (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis elegans GN=cpar-1 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 3 Query: 165 VKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 452 + K RYRPG AL EIRKYQ+S +LLI K PF RLVREI Q F +DLR +S A+ ALQEA+EA LV +F+ ++L + H+KR T+ D+QL RR+ Sbjct: 158 ISKTRRYRPGQKALEEIRKYQESEDLLIPKAPFARLVREIMQTSTPFSSDLRIRSDAINALQEASEALLVQMFDGSSLISAHSKRATLTTTDVQLYRRL 256 The following BLAST results are available for this feature:
BLAST of CB290429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 212
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290429 ID=CB290429; Name=CB290429; organism=Citrus sinensis; type=EST; length=622bpback to top |