CB290429

Overview
NameCB290429
Unique NameCB290429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_CHICK (Histone H3-like centromeric protein A OS=Gallus gallus GN=CENPA PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.282e-26
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 3
Query:  171 KPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458
            +  RYRPG  ALREIR+YQ ST LL+R+ PF R+VREI   F    D R+Q+ A+LALQEAAEA+LV L ED  LC++HA+RVT+ PKD+QLARR+RG
Sbjct:   28 RARRYRPGQRALREIRRYQSSTALLLRRQPFARVVREICLLFTRGVDYRWQAMALLALQEAAEAFLVHLLEDAYLCSLHARRVTLYPKDLQLARRLRG 125          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_HUMAN (Histone H3-like centromeric protein A OS=Homo sapiens GN=CENPA PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 70/132 (53.03%), Postives = 84/132 (63.64%), Query Frame = 3
Query:   84 RKSTGGKAPRKQ----LATKAARKSAPTTGGVKKPH-RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458
            R+S   +APR++      T    +  P+ G     H R R G   L+EIRK QKST LLIRKLPF RL REI   F    D  +Q+ A+LALQEAAEA+LV LFED  L  +HA RVT+ PKD+QLARRIRG
Sbjct:    5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 134          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_CRIGR (Histone H3-like centromeric protein A OS=Cricetulus griseus GN=CENPA PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.084e-25
Identity = 67/123 (54.47%), Postives = 84/123 (68.29%), Query Frame = 3
Query:  108 PRKQLATKAARKSAPTTGGVKKPHRYRPGT----VALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458
            PR++  T   R S+P  G  ++  R  PG     + L+EI+K Q+ST+LL+RKLPF R+VREI   F    DL +Q+ A+LALQEAAEA+LV LFED  L  +HA RVTI PKDIQL RRIRG
Sbjct:    3 PRRKPRTPRRRPSSPVPGPSRRSSR--PGKRRKFLWLKEIKKLQRSTDLLLRKLPFSRVVREICGKFTRGVDLCWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTIFPKDIQLTRRIRG 123          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: HTR12_ARATH (Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 5.240e-24
Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 3
Query:   69 TKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL--RFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 461
            T+QT   ++     R+    K +R++ P  G  KK +RYRPGTVAL+EIR +QK T LLI    F R VR I          R+ + A++ALQEAAE YLVGLF D+ LCAIHA+RVT+M KD +LARR+ G+
Sbjct:   45 TQQTNPTTSPATGTRR--GAKRSRQAMPR-GSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLMRKDFELARRLGGK 174          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_BOVIN (Histone H3-like centromeric protein A OS=Bos taurus GN=CENPA PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 6.844e-24
Identity = 68/137 (49.64%), Postives = 84/137 (61.31%), Query Frame = 3
Query:   54 RVMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458
            R   R  +T R+     AP       AA +  P+ G   +P   R  TV L+EIR  QK+T LL+RK PF RL REI   F    D  +Q+ A+LALQEAAEA+LV LFED  L ++HA RVT+ PKD+QLARRIRG
Sbjct:    4 RRQKRKPETPRRRPASPAP-------AAPRPTPSLGTSSRPLARRRHTV-LKEIRTLQKTTHLLLRKSPFCRLAREICVQFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLSLHAGRVTLFPKDVQLARRIRG 132          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: HCP3_CAEEL (Histone H3-like centromeric protein hcp-3 OS=Caenorhabditis elegans GN=hcp-3 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.938e-24
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 3
Query:  165 VKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD---FKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 452
            V K  RYRPG  AL EIRKYQK+ +LLI+K PF RLVREI Q    F  D R +S A+ ALQEAAEA+LV +FE ++L + HAKRVT+M  DIQL RR+
Sbjct:  185 VTKTRRYRPGQKALEEIRKYQKTEDLLIQKAPFARLVREIMQTSTPFGADCRIRSDAISALQEAAEAFLVEMFEGSSLISTHAKRVTLMTTDIQLYRRL 283          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_TETTH (Histone H3-like centromeric protein CNA1 OS=Tetrahymena thermophila GN=CNA1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23
Identity = 58/123 (47.15%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  111 RKQLATKAARKSAPT---TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD--LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 464
            R + +TK  R+S+     +   K   R+RPG  AL+++R+Y ++  LLIRKLPFQRL+REI+     +  LR+ S A++ LQ   E Y+V  FED N CA+HAKRVT+M KD+ LA RIRG++
Sbjct:   54 RNKASTKKKRESSGEKYESARDKVIRRFRPGDNALKQLRQYNQTPSLLIRKLPFQRLIREISTRMTEEDSLRWTSFALVLLQTVVEDYMVSFFEDANACALHAKRVTLMSKDLALAARIRGQK 176          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: CENPA_MOUSE (Histone H3-like centromeric protein A OS=Mus musculus GN=Cenpa PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 3
Query:  108 PRKQLATKAARKSAPTTGGVKKPH-------RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 458
            PR++  T   R S+P  G  ++         R R   + L+EI+  QKST+LL RK PF  +VREI + F    D  +Q+ A+LALQEAAEA+L+ LFED  L ++HA RVT+ PKDIQL RRIRG
Sbjct:    3 PRRKPQTPRRRPSSPAPGPSRQSSSVGSQTLRRRQKFMWLKEIKTLQKSTDLLFRKKPFSMVVREICEKFSRGVDFWWQAQALLALQEAAEAFLIHLFEDAYLLSLHAGRVTLFPKDIQLTRRIRG 128          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEBR (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis briggsae GN=cpar-1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 58/101 (57.43%), Postives = 75/101 (74.26%), Query Frame = 3
Query:  165 VKKPH--RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIA--QDFKT-DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 452
            V K H  ++RPG  AL EIRKYQKST++LI+K PF RLV EI   Q +K+ D R ++ A++ALQEAAEA++V +FE + L   HAKRVT+MP DIQL RR+
Sbjct:  239 VTKTHNRKFRPGQKALAEIRKYQKSTDMLIQKAPFVRLVHEIIREQTYKSQDYRIRADALMALQEAAEAFMVEMFEGSVLICNHAKRVTLMPTDIQLYRRL 339          
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEEL (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis elegans GN=cpar-1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 3
Query:  165 VKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 452
            + K  RYRPG  AL EIRKYQ+S +LLI K PF RLVREI Q    F +DLR +S A+ ALQEA+EA LV +F+ ++L + H+KR T+   D+QL RR+
Sbjct:  158 ISKTRRYRPGQKALEEIRKYQESEDLLIPKAPFARLVREIMQTSTPFSSDLRIRSDAINALQEASEALLVQMFDGSSLISAHSKRATLTTTDVQLYRRL 256          
The following BLAST results are available for this feature:
BLAST of CB290429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
CENPA_CHICK3.282e-2662.24Histone H3-like centromeric protein A OS=Gallus ga... [more]
CENPA_HUMAN6.190e-2553.03Histone H3-like centromeric protein A OS=Homo sapi... [more]
CENPA_CRIGR8.084e-2554.47Histone H3-like centromeric protein A OS=Cricetulu... [more]
HTR12_ARATH5.240e-2449.62Histone H3-like centromeric protein HTR12 OS=Arabi... [more]
CENPA_BOVIN6.844e-2449.64Histone H3-like centromeric protein A OS=Bos tauru... [more]
HCP3_CAEEL8.938e-2460.61Histone H3-like centromeric protein hcp-3 OS=Caeno... [more]
CENPA_TETTH5.794e-2347.15Histone H3-like centromeric protein CNA1 OS=Tetrah... [more]
CENPA_MOUSE3.755e-2248.41Histone H3-like centromeric protein A OS=Mus muscu... [more]
HCP3L_CAEBR1.864e-2157.43Histone H3-like centromeric protein cpar-1 OS=Caen... [more]
HCP3L_CAEEL2.434e-2154.55Histone H3-like centromeric protein cpar-1 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290429 ID=CB290429; Name=CB290429; organism=Citrus sinensis; type=EST; length=622bp
GCACTAGGGTTGCATTCAGATCTGTGCATTTTGCAGTTTGTGTTGGTGAT
TAAAGAGTAATGGCCCGTACGAAGCAAACCGCGCGCAAGTCAACTGGAGG
AAAGGCTCCGAGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTC
CAACAACTGGTGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTGTC
GCCCTCCGTGAAATCCGCAAATATCAGAAGAGCACTGAGCTTTTGATCCG
CAAGCTGCCTTTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGA
CAGATTTGAGGTTCCAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGGCA
GAGGCTTATCTCGTGGGTCTGTTCGAGGACACCAACCTTTGTGCTATCCA
TGCCAAGCGAGTCACCATTATGCCCAAGGATATTCAACTGGCAAGGCGAA
TCCGAGGCGAGCGTGCTTAATTTGTGATTCCTTATGTAGTCGTCAGTTTC
CTATTTAGTTTGCTAGTTTTTCTTTATTCCGGTTTTTACATGTAAAGAAT
GATATGATGGATTGAAGAATATTTGGAATTTGATATTTGTTAGATAAACA
AAAGGAAACCAAATCAAAATAA
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