CB290429

Overview
NameCB290429
Unique NameCB290429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H32_TETMI (Histone H3.2 (Fragment) OS=Tetrahymena mimbres PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 182
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H32_TETMA (Histone H3.2 (Fragment) OS=Tetrahymena malaccensis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 182
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H32_TETLE (Histone H3.2 (Fragment) OS=Tetrahymena leucophrys PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 182
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H32_TETHY (Histone H3.2 (Fragment) OS=Tetrahymena hyperangularis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 182
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H32_TETFU (Histone H3.2 (Fragment) OS=Tetrahymena furgasoni PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 182
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H32_TETEL (Histone H3.2 (Fragment) OS=Tetrahymena elliotti PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 182
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H32_TETCU (Histone H3.2 (Fragment) OS=Tetrahymena caudata PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 182
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H32_TETCA (Histone H3.2 (Fragment) OS=Tetrahymena capricornis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 182
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H32_TETAU (Histone H3.2 (Fragment) OS=Tetrahymena australis PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 182
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
[Close]
BLAST of CB290429 vs. ExPASy Swiss-Prot
Match: H32_TETAM (Histone H3.2 (Fragment) OS=Tetrahymena americanus PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:   60 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR 182
            MARTKQTARKSTG KAPRKQLA+KAARKSAP TGG+KKPHR
Sbjct:    1 MARTKQTARKSTGAKAPRKQLASKAARKSAPATGGIKKPHR 41
The following BLAST results are available for this feature:
BLAST of CB290429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H32_TETMI3.764e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena mimbres PE=... [more]
H32_TETMA3.764e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena malaccensis... [more]
H32_TETLE3.764e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena leucophrys ... [more]
H32_TETHY3.764e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena hyperangula... [more]
H32_TETFU3.764e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena furgasoni P... [more]
H32_TETEL3.764e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena elliotti PE... [more]
H32_TETCU3.764e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena caudata PE=... [more]
H32_TETCA3.764e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena capricornis... [more]
H32_TETAU3.764e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena australis P... [more]
H32_TETAM3.764e-1490.24Histone H3.2 (Fragment) OS=Tetrahymena americanus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290429 ID=CB290429; Name=CB290429; organism=Citrus sinensis; type=EST; length=622bp
GCACTAGGGTTGCATTCAGATCTGTGCATTTTGCAGTTTGTGTTGGTGAT
TAAAGAGTAATGGCCCGTACGAAGCAAACCGCGCGCAAGTCAACTGGAGG
AAAGGCTCCGAGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTC
CAACAACTGGTGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTGTC
GCCCTCCGTGAAATCCGCAAATATCAGAAGAGCACTGAGCTTTTGATCCG
CAAGCTGCCTTTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGA
CAGATTTGAGGTTCCAAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGGCA
GAGGCTTATCTCGTGGGTCTGTTCGAGGACACCAACCTTTGTGCTATCCA
TGCCAAGCGAGTCACCATTATGCCCAAGGATATTCAACTGGCAAGGCGAA
TCCGAGGCGAGCGTGCTTAATTTGTGATTCCTTATGTAGTCGTCAGTTTC
CTATTTAGTTTGCTAGTTTTTCTTTATTCCGGTTTTTACATGTAAAGAAT
GATATGATGGATTGAAGAATATTTGGAATTTGATATTTGTTAGATAAACA
AAAGGAAACCAAATCAAAATAA
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