CB290439

Overview
NameCB290439
Unique NameCB290439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_TOBAC (Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.980e-61
Identity = 117/168 (69.64%), Postives = 136/168 (80.95%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SF Y E+ NG+LWEV+GKWVVQGAV+V+IGANPSA          DQA+KVVDIVDTFRLQEQP+F+KKQFV +MK+YIK LTPKL AE++E+FK NI+GATK+LLSKLSDLQFFVGESM DD G+V AYYK+GATDPTFLY A+GLKEVKC
Sbjct:    1 MLVYQDLLSGDELPSDSFSYTELGNGVLWEVQGKWVVQGAVDVNIGANPSAEGADEDEGVDDQAIKVVDIVDTFRLQEQPSFDKKQFVAYMKKYIKNLTPKLGAEQEEVFKNNIQGATKYLLSKLSDLQFFVGESMADDTGMVFAYYKDGATDPTFLYLAHGLKEVKC 168          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.980e-61
Identity = 119/168 (70.83%), Postives = 133/168 (79.17%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           S+PYKEIENGMLWEVEGKWVV+GAV+V+IGANPSA            AVKVVDIVD FRLQEQP F+KKQF+ F+K+YIKLLTPKLEAEKQE FKKNIEGATK+LL KL DLQFFVGESM DD  LV AYYK+GA DPTFLYF++ LKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVVKGAVDVNIGANPSAEGGEDEGVDDT-AVKVVDIVDVFRLQEQPPFDKKQFLGFVKKYIKLLTPKLEAEKQEHFKKNIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFSFALKEIKC 167          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 6.640e-61
Identity = 116/168 (69.05%), Postives = 133/168 (79.17%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SFPY+E+ENG+LWEV+G WVVQGAV+VDIGANPSA          DQAVKVVDIVDTFRLQEQPAF+KKQF+ ++KRYIK LT KLE E+ + FKKN+E ATK+LLSKL DLQFFVGESM DD  +V AYY+EGA DPTFLYFA+GLKEVKC
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKNVESATKYLLSKLKDLQFFVGESMHDDGSVVFAYYREGAADPTFLYFAHGLKEVKC 168          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.084e-58
Identity = 114/168 (67.86%), Postives = 130/168 (77.38%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SFPYKEIENGM+WEVEGKWVV+GAV+VDIGANPSA          DQAVKVVDIVDTFRLQEQP+ +KK F++ +K+YIK LTP L+ E+QE FK  IEGA K+LL K+ DLQFFVGESM DD+ +V AYYKEGATDPTFLY A GLKEVKC
Sbjct:    1 MLVYQDLVSGDELLSDSFPYKEIENGMIWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPSMDKKVFLSCIKKYIKKLTPLLQGEQQEAFKNKIEGAVKYLLPKVKDLQFFVGESMADDSAMVFAYYKEGATDPTFLYIAPGLKEVKC 168          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.974e-58
Identity = 116/168 (69.05%), Postives = 128/168 (76.19%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            MIVYQ           SFPYKE+ NG+LWEVEGKWVVQGAV+VDIGANPSA           + VKVVDIVDTFRLQEQP F+KKQF+ F+KRYIK L  KL  E+Q  FKKN+EGA K L+SKLSDLQFFVGESM DD  +V AYYK+GATDPTFLYFA GLKEVKC
Sbjct:    1 MIVYQDLLSGDELLSDSFPYKELYNGVLWEVEGKWVVQGAVDVDIGANPSAEGGDEEGVKI-RLVKVVDIVDTFRLQEQPPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 8.974e-58
Identity = 112/168 (66.67%), Postives = 128/168 (76.19%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SFPYKEIENG+LWEVEGKWV  GAV+V+IGANPSA          D   KVVDIVDTFRLQEQP ++KK F+ ++K+YIKLLTPKL  E Q +FKK IEGATKFLL +LSD QFFVGE M DD+ LV AYYKEG+T+PTFLYFA+GLKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_BRAOL (Translationally-controlled tumor protein homolog OS=Brassica oleracea GN=TCTP PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.922e-57
Identity = 110/168 (65.48%), Postives = 125/168 (74.40%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VY            SFPYKEIENG+LWEVEGKW  +G V V+IGANPSA          D   KVVDIVDTFRLQEQP ++KK F+ ++K+YIKLLTPKL  E+QE FKK IEGATKFLL KL D QFFVGE M DD+ +V AYYKEGAT+PTFLYFA+GLKEVKC
Sbjct:    1 MLVYTDLLTGDELLSDSFPYKEIENGILWEVEGKWTTKGCVEVNIGANPSAEEGGEDEGVDDSVEKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLTPEQQEEFKKGIEGATKFLLPKLKDFQFFVGEGMHDDSTIVFAYYKEGATNPTFLYFAHGLKEVKC 168          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_MAIZE (Translationally-controlled tumor protein homolog OS=Zea mays GN=TCTP PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.433e-55
Identity = 110/168 (65.48%), Postives = 128/168 (76.19%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SF YKE+ENG+LWEVEGKWV QG V+VDIGANPSA            AVKVVDIVDTFRLQEQP F+KK FV+++K+YIK LT  LE EK + FKK +EGATKFLLSKL DLQFFVGESM+DDA +  AYYK+GAT+ TFLYF++GLKE+KC
Sbjct:    1 MLVYQDLLSGDELLSDSFTYKELENGVLWEVEGKWVTQGPVDVDIGANPSAEGGEDESVDDT-AVKVVDIVDTFRLQEQPPFDKKSFVSYIKKYIKNLTAVLEPEKADEFKKGVEGATKFLLSKLKDLQFFVGESMKDDASVAFAYYKDGATNSTFLYFSHGLKEIKC 167          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP1_DICDI (Translationally-controlled tumor protein homolog 1 OS=Dictyostelium discoideum GN=DDB_G0282853 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.120e-18
Identity = 55/155 (35.48%), Postives = 85/155 (54.84%), Query Frame = -1
Query:  279 FPYKEIENGMLWEVEGKWV-VQGAVNVDIGANPSAXXXXXXXXXXDQAVK-VVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKL---EAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVK 728
            +P  EI NG+++EV+ K V +   V V+ GAN ++          +   K V+++VD  RL E  +F+KK +  ++K Y+K +  KL      + + FKK+     K +L K  + +F+ GE+M  D  + L YYK G  DP FLYF  GL+ VK
Sbjct:   20 YPMTEINNGLIYEVQAKMVTIDLDVKVNTGANAASEETEEDEGVDNAGSKQVINVVDAMRLVET-SFDKKSYTGYIKAYMKEVLAKLADNNPSRVDAFKKDAADFVKSVLGKFDEYKFYTGENMDADGHVALMYYKPGEVDPIFLYFKDGLESVK 173          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_GIBZE (Translationally-controlled tumor protein homolog OS=Gibberella zeae GN=FG02523 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.549e-17
Identity = 59/173 (34.10%), Postives = 93/173 (53.76%), Query Frame = -1
Query:  279 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLE--AEKQELFKKNIEGATKF----LLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVK 779
            M++Y            S+  KE++ G+++E +   + +GAV V+IGAN SA            AVKV +IV++FRLQ    F+KK ++ ++K Y+K +  KL+      E  K    GA+KF    ++ K  D +F+ GESM  D  +VL  Y+E    P  +++ +GLKE K
Sbjct:    1 MLIYNDILNGDELISDSYDLKEVD-GIVYEADCAMIEEGAVEVNIGANASAEEAAEDLDDG--AVKVNNIVNSFRLQST-TFDKKSYLAYLKGYMKAIKAKLQENGSSAEDIKAFETGASKFVKDTIVPKFKDFEFYTGESMDPDGMVVLLNYREDGVTPYTIFWKHGLKETK 169          
The following BLAST results are available for this feature:
BLAST of CB290439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
TCTP_TOBAC2.980e-6169.64Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA2.980e-6170.83Translationally-controlled tumor protein homolog O... [more]
TCTP_HORVU6.640e-6169.05Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME3.084e-5867.86Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ8.974e-5869.05Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH8.974e-5866.67Translationally-controlled tumor protein homolog O... [more]
TCTP_BRAOL9.922e-5765.48Translationally-controlled tumor protein homolog O... [more]
TCTP_MAIZE1.433e-5565.48Translationally-controlled tumor protein homolog O... [more]
TCTP1_DICDI3.120e-1835.48Translationally-controlled tumor protein homolog 1... [more]
TCTP_GIBZE1.549e-1734.10Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01be05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01be05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290439 ID=CB290439; Name=CB290439; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTTTTTTTCTATTATCTGTATTCTTTTATTACTCACCCTTAAT
TAAGTATACATCTCCTCATCATCAGAAAGACAGAAAAGCATATTATTTAA
AGATAAAAAAAGTATCAACTTTGAACGCAGAGATCCTCAGAACACACTAT
TTTTATAATGCCTACTAAGAAGATCATAAATAAATTATATATCCTCAGCT
AAGGGCCTAAAACTAAAGGGGTTTACGCAGCCATTGAAAGCCAATAATCA
CCCGTATTCCATAGACTTGATTTTAACACTTAACTTCCTTTAATCCATAT
GCAAAGTACAGAAACGTTGGATCGGTGGCACCCTCCTTGTAGTATGCTAA
CACCAAGCCTGCATCGTCCTGCATGCTCTCACCCACAAAGAATTGAAGGT
CACTGAGCTTTGAAAGCAGGAACTTGGTAGCTCCCTCGATGTTCTTCTTA
AACAACTCTTGCTTCTCTGCTTCCAATTTGGGTGTCAACAATTTGATGTA
CCGCTTCATGAAGGTAACAAATTGCTTTTTTTCAAAAGCAGGTTGTTCCT
GAAGCCTGAAGGTATCCACAATATCGACAACCTTGACAGCTTGGTCATCG
ACACCTTCATCGTCATCTCCGCCTTCTGCAGAAGGGTTAGCCCCAATGTC
TACGTTCACTGCCCCTTGAACAACCCACTTGCCTTCAACTTCCCACAGCA
TTCCATTTTCAATTTCCTTGTACGGGAATGAGTCTGAGAGAAGCTCATCA
CCAGAGAGAAGATCCTGATAAACTATCATGTTTAACGTTTATGAAAATTT
TTTTTTTTT
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