CB290449

Overview
NameCB290449
Unique NameCB290449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB290449 vs. ExPASy Swiss-Prot
Match: CH10_STAS1 (10 kDa chaperonin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 32/94 (34.04%), Postives = 60/94 (63.83%), Query Frame = 2 
Query:  296 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILET 574
            +KPLG+RV+++    E+ T  GI L  +A+ K   G ++AVG G+ +   +++   V  G +V++ +YAGTE++     +LI+ E+D++ I+E+
Sbjct:    2 LKPLGNRVIIQKSEQEQTTKSGIVLTDSAKEKSNEGTIIAVGAGRILKDGSRVAPEVNEGDKVVFQQYAGTEVKRGDETYLIVNEEDILAIIES 95
The following BLAST results are available for this feature:
BLAST of CB290449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 491
Match NameE-valueIdentityDescription
CH10_STAS17.749e-1134.0410 kDa chaperonin OS=Staphylococcus saprophyticus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01be10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01be10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290449 ID=CB290449; Name=CB290449; organism=Citrus sinensis; type=EST; length=782bp
GATCTTCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTAC
TCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTC
TGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAA
GGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCG
TCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGC
TTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAA
ACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAA
CTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCA
GGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACT
GGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAG
GGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGAT
GACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCT
TAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACTGCTG
GAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGGAATG
GTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGAAACC
TCTATCCATTGCTCCAGGGAACACGGTGATGT
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