CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:443..1142. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SYNE7 (Elongation factor Tu OS=Synechococcus elongatus (strain PCC 7942) GN=tuf PE=3 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 2.025e-73
Identity = 130/180 (72.22%), Postives = 158/180 (87.78%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            +ITGRGTVATGR+ERG++KVGET+++VGL++TR+ TVTGVEMFQKTLDE +AGDNVGLLLRG+QK DI+RGMVLAKPG+ITPHTKF + VYVLKKEEGGRH+PFF GYRPQF +RT DVTG +S    D    ++MV+PGDR+KM VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  230 TITGRGTVATGRIERGSVKVGETIEIVGLRDTRSTTVTGVEMFQKTLDEGLAGDNVGLLLRGIQKTDIERGMVLAKPGSITPHTKFESEVYVLKKEEGGRHTPFFPGYRPQFYVRTTDVTGAISDFTADDGSAAEMVIPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGVVSKILQ 409          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJB (Elongation factor Tu OS=Synechococcus sp. GN=tuf PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.645e-73
Identity = 134/180 (74.44%), Postives = 156/180 (86.67%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG IKVGETV+LVGL+ETR+ TVTG+EMFQKTLDE +AGDNVG+LLRG+QK +++RGMVLAKP TITPHT F + VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG +S    D   + +MVMPGDRVKM VELI P+A EQGMRFAIREGG+TVGAGV+  I++
Sbjct:  230 SITGRGTVATGRIERGRIKVGETVELVGLRETRSTTVTGLEMFQKTLDEGIAGDNVGVLLRGIQKNEVERGMVLAKPKTITPHTNFESEVYVLKKEEGGRHTPFFAGYRPQFYVRTTDVTGTISSFTADDGSQPEMVMPGDRVKMTVELIQPIAIEQGMRFAIREGGRTVGAGVVSKILK 409          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_OSTTA (Elongation factor Tu, chloroplastic OS=Ostreococcus tauri GN=tufA PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.645e-73
Identity = 131/180 (72.78%), Postives = 160/180 (88.89%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERGT+KVG +++++G  +TR  TVTG+EMFQKTL+E++AGDNVG+LLRG+QK DI+RGMVLA+PGTITPHTKF A VYVLKKEEGGRH+PFF GYRPQF +RT DVTG++   ++D+ +E+ MVMPGDRVKMVVELI P+A E GMRFAIREGG+TVGAGV+ SI++
Sbjct:  230 SITGRGTVATGRVERGTVKVGASIEIIGYVDTRVATVTGLEMFQKTLEESVAGDNVGVLLRGIQKEDIERGMVLAQPGTITPHTKFEAQVYVLKKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFISDEGDEATMVMPGDRVKMVVELIQPIAIENGMRFAIREGGRTVGAGVVSSILK 409          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_ACAM1 (Elongation factor Tu OS=Acaryochloris marina (strain MBIC 11017) GN=tuf PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 7.696e-73
Identity = 132/180 (73.33%), Postives = 156/180 (86.67%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG + VGETV+LVG+++TR+ TVTGVEMFQKTLDE MAGDNVGLLLRGVQK DI+RGMVLAKPG+ITPHT+F + VY+LKK+EGGRH+PFF GYRPQF +RT DVTG +S    D    ++MVMPGDR+KM VELI P+A EQGMRFAIREGG+TVGAGV+  I++
Sbjct:  230 SITGRGTVATGRIERGKVVVGETVELVGIRDTRSTTVTGVEMFQKTLDEGMAGDNVGLLLRGVQKEDIERGMVLAKPGSITPHTQFESEVYILKKDEGGRHTPFFPGYRPQFYVRTTDVTGTISAFTADDGSAAEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTVGAGVVSKILK 409          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJA (Elongation factor Tu OS=Synechococcus sp. (strain JA-3-3Ab) GN=tuf PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.313e-72
Identity = 132/180 (73.33%), Postives = 157/180 (87.22%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG IKVGETV+LVGL+ETR+ TVTG+EMFQKTLDE +AGDNVG+LLRG+QK +++RGMVLAKP TITPHT+F + VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG ++    D   + +MVMPGDRV+M VELI P+A EQGMRFAIREGG+TVGAGV+  I++
Sbjct:  230 SITGRGTVATGRIERGRIKVGETVELVGLRETRSTTVTGLEMFQKTLDEGIAGDNVGVLLRGIQKNEVERGMVLAKPKTITPHTQFESEVYVLKKEEGGRHTPFFAGYRPQFYVRTTDVTGTITSFTADDGSKPEMVMPGDRVRMTVELIQPIAIEQGMRFAIREGGRTVGAGVVSKILK 409          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SYNPW (Elongation factor Tu OS=Synechococcus sp. (strain WH7803) GN=tuf PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.239e-72
Identity = 131/180 (72.78%), Postives = 153/180 (85.00%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGE +++VG+K+TR  TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++    D   + +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  220 SITGRGTVATGRIERGIVKVGEEIEIVGIKDTRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSDVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIE 399          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CHLVU (Elongation factor Tu, chloroplastic OS=Chlorella vulgaris GN=tufA PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.239e-72
Identity = 129/179 (72.07%), Postives = 157/179 (87.71%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SITGRGTVATGRVERG +K+G+TV+LVGL++T+  TVTG+EMFQKTLDE++AGDNVG+LLRGVQK DI+RGMVLAKPG+I PHTKF A VYVL KEEGGRH+PFF GYRPQF +RT DVTG++     D +  ++MVMPGDR+KM+VELI P+A E+GMRFAIREGG+TVGAGV+ +I+
Sbjct:  230 SITGRGTVATGRVERGCVKIGDTVELVGLRDTKTTTVTGLEMFQKTLDESVAGDNVGILLRGVQKIDIERGMVLAKPGSILPHTKFEAQVYVLNKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFRADDNTATQMVMPGDRIKMIVELIQPIAIEKGMRFAIREGGRTVGAGVVSTIV 408          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_OLTVI (Elongation factor Tu, chloroplastic OS=Oltmannsiellopsis viridis GN=tufA PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.924e-72
Identity = 132/179 (73.74%), Postives = 156/179 (87.15%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SITGRGTVATGRVERG +K+G+TV+LVGLK+T   TVTG+EMFQKTLDE++AGDNVG+LLRGVQK +IQRGMVLAKPG+I+PHTKF A VYVL KEEGGRH+PFF GYRPQF +RT DVTG++   + D    S+MVMPGDRVKM+VELI P+A E+GMRFAIREGG+TVGAGV+  I+
Sbjct:  231 SITGRGTVATGRVERGVVKIGDTVELVGLKDTTETTVTGLEMFQKTLDESVAGDNVGILLRGVQKENIQRGMVLAKPGSISPHTKFEAQVYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFVADDGSASQMVMPGDRVKMLVELINPIAVEKGMRFAIREGGRTVGAGVVSEIL 409          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CYAME (Elongation factor Tu, chloroplastic OS=Cyanidioschyzon merolae GN=tufA PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.924e-72
Identity = 132/180 (73.33%), Postives = 153/180 (85.00%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGET+++VGLK T+  TVTG+EMFQKTLDE +AGDNVG+LLRGVQK DI+RGMVLAKPG+ITPHTKF A VYVL KEEGGRH+PFF GYRPQF +RT DVTG +     D   +++MVMPGDR+KM V LI PVA EQGMRFAIREGG+TVGAGV+  I+E
Sbjct:  231 SITGRGTVATGRIERGRVKVGETIEIVGLKNTKTTTVTGLEMFQKTLDEGIAGDNVGVLLRGVQKTDIERGMVLAKPGSITPHTKFEAEVYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGTIEDFTADDGSKAEMVMPGDRIKMCVNLIYPVAIEQGMRFAIREGGRTVGAGVVTKILE 410          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_TRIEI (Elongation factor Tu OS=Trichodesmium erythraeum (strain IMS101) GN=tuf PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.819e-72
Identity = 134/180 (74.44%), Postives = 152/180 (84.44%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG IKVGETV+LVG+K+TRN TVTGVEMFQK LDE MAGDNVGLLLRG+QK DIQRGMVLAK G+ITPH KF + VYVLKKEEGGRH+PFF  YRPQF +RT DVTG +     D    ++MVMPGDR+KM V+LI PVA EQGMRFAIREGG+T+GAGV+  I+E
Sbjct:  230 SITGRGTVATGRIERGKIKVGETVELVGIKDTRNSTVTGVEMFQKILDEGMAGDNVGLLLRGMQKDDIQRGMVLAKSGSITPHKKFESEVYVLKKEEGGRHTPFFPNYRPQFYIRTTDVTGAIESFTADDGSVAEMVMPGDRIKMTVQLINPVAIEQGMRFAIREGGRTIGAGVVSKIVE 409          
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SYNE72.025e-7372.22Elongation factor Tu OS=Synechococcus elongatus (s... [more]
EFTU_SYNJB2.645e-7374.44Elongation factor Tu OS=Synechococcus sp. GN=tuf P... [more]
EFTU_OSTTA2.645e-7372.78Elongation factor Tu, chloroplastic OS=Ostreococcu... [more]
EFTU_ACAM17.696e-7373.33Elongation factor Tu OS=Acaryochloris marina (stra... [more]
EFTU_SYNJA1.313e-7273.33Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNPW2.239e-7272.78Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_CHLVU2.239e-7272.07Elongation factor Tu, chloroplastic OS=Chlorella v... [more]
EFTU_OLTVI2.924e-7273.74Elongation factor Tu, chloroplastic OS=Oltmannsiel... [more]
EFTU_CYAME2.924e-7273.33Elongation factor Tu, chloroplastic OS=Cyanidiosch... [more]
EFTU_TRIEI3.819e-7274.44Elongation factor Tu OS=Trichodesmium erythraeum (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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