CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU1_ALKMQ (Elongation factor Tu 1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.743e-62
Identity = 120/181 (66.30%), Postives = 142/181 (78.45%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKET-RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KV E + LVGL E  R   VTGVEMF+K LD+  AGDNVG+LLRG+Q+ +I+RG VLAK G+I PHTKF+A VYVLKKEEGGRH+PFF GYRPQF  RT DVTG +        E  +MVMPGD + M +ELI P+A E+G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  222 SITGRGTVATGRIERGIVKVQEEISLVGLSEAPRKLVVTGVEMFRKLLDQGQAGDNVGILLRGIQRDEIERGQVLAKTGSIQPHTKFMAEVYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIKL-----PEGVEMVMPGDNITMEIELISPIATEEGLRFAIREGGRTVGAGVVASIIE 397          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_STAES (Elongation factor Tu OS=Staphylococcus epidermidis (strain ATCC 12228) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.583e-62
Identity = 120/180 (66.67%), Postives = 140/180 (77.78%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG IKVGE V+++G+ ET   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHTKF A VYVL K+EGGRH+PFF  YRPQF  RT DVTG V+       E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  I E
Sbjct:  220 SITGRGTVATGRVERGQIKVGEEVEIIGMHETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTKFKAEVYVLSKDEGGRHTPFFTNYRPQFYFRTTDVTGVVNL-----PEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIFE 394          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_STAEQ (Elongation factor Tu OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.583e-62
Identity = 120/180 (66.67%), Postives = 140/180 (77.78%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG IKVGE V+++G+ ET   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHTKF A VYVL K+EGGRH+PFF  YRPQF  RT DVTG V+       E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  I E
Sbjct:  220 SITGRGTVATGRVERGQIKVGEEVEIIGMHETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTKFKAEVYVLSKDEGGRHTPFFTNYRPQFYFRTTDVTGVVNL-----PEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIFE 394          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CHLP8 (Elongation factor Tu OS=Chlorobaculum parvum (strain NCIB 8327) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.583e-62
Identity = 118/180 (65.56%), Postives = 140/180 (77.78%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGR+ERG IKVG  V++VG+K T    VTG+EMFQKTLDE  AGDN GLLLRGV K  ++RGMV+AKPG+ITPHTKF A VY+LKKEEGGRH+PFF GYRPQF  RT DVTG V+       E  +MVMPGD + + VELI P+A E+ +RFAIREGG+TVGAG +  I+E
Sbjct:  219 SISGRGTVGTGRIERGIIKVGNEVEIVGIKPTTKSVVTGIEMFQKTLDEGQAGDNAGLLLRGVDKEALERGMVIAKPGSITPHTKFKAEVYILKKEEGGRHTPFFNGYRPQFYFRTTDVTGSVTL-----PEGVEMVMPGDNLSVDVELIAPIAMEESLRFAIREGGRTVGAGSVTKIVE 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CALS8 (Elongation factor Tu OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.583e-62
Identity = 121/181 (66.85%), Postives = 141/181 (77.90%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTV TGRVERGT+K GE V++VG   E R   VTG+EMF+K LDEA+AGDNVG LLRG+QK +++RG VLAKPGTI PHTKF A VYVL KEEGGRH+PFF GYRPQF  RT DVTG ++       E  +M MPGD V+M VELI P+A E G+RFAIREGG+TVGAG + +IIE
Sbjct:  225 SITGRGTVVTGRVERGTLKTGEEVEIVGFAPEPRKTVVTGIEMFRKVLDEAVAGDNVGCLLRGIQKNEVERGQVLAKPGTIKPHTKFKAQVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGTITL-----PEGVEMCMPGDNVEMTVELISPIAIESGLRFAIREGGRTVGAGSVTTIIE 400          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_ANATD (Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.583e-62
Identity = 121/181 (66.85%), Postives = 141/181 (77.90%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTV TGRVERGT+K GE V++VG   E R   VTG+EMF+K LDEA+AGDNVG LLRG+QK +++RG VLAKPGTI PHTKF A VYVL KEEGGRH+PFF GYRPQF  RT DVTG ++       E  +M MPGD V+M VELI P+A E G+RFAIREGG+TVGAG + +IIE
Sbjct:  225 SITGRGTVVTGRVERGTLKTGEEVEIVGFAPEPRKTVVTGIEMFRKVLDEAVAGDNVGCLLRGIQKNEVERGQVLAKPGTIKPHTKFKAQVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGTITL-----PEGVEMCMPGDNVEMTVELISPIAIESGLRFAIREGGRTVGAGSVTTIIE 400          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU1_MYXXD (Elongation factor Tu 1 OS=Myxococcus xanthus (strain DK 1622) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.583e-62
Identity = 118/180 (65.56%), Postives = 143/180 (79.44%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTVATGRVERG IKVGE V++VGL+ T+   VTGVEMF+K LD+ MAGDN+G L+RG+++ D++RG VLAKPG+ITPHTKF A +YVL KEEGGRH+PFF GYRPQF  RT DVTG V        E  +MVMPGD + + VELI PVA E+ +RFA+REGG+TVGAGV+  IIE
Sbjct:  222 SISGRGTVATGRVERGIIKVGEEVEVVGLRPTQKTVVTGVEMFRKLLDQGMAGDNIGALVRGLKREDMERGQVLAKPGSITPHTKFKAQIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSVKL-----PENVEMVMPGDNIAIEVELITPVAMEKELRFAVREGGRTVGAGVVAEIIE 396          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_STIHE (Elongation factor Tu, chloroplastic OS=Stigeoclonium helveticum GN=tufA PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.680e-62
Identity = 121/189 (64.02%), Postives = 147/189 (77.78%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRV---SFIMNDKDEE------SKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERGT+KV ETV+++GL++T+  TVT +EMFQKTLDE +AGDNVG+LLRGVQK DI+RGMV+AKPGTI PHT F   VYVL  EEGGR S FF GY+PQF +RT DVTG++   S+I      E      + MV PGD V M ++LI P+A E+GMRFAIREGG+TVGAG++  I+E
Sbjct:  230 SITGRGTVATGRVERGTLKVNETVEIIGLRDTKTTTVTAIEMFQKTLDETIAGDNVGILLRGVQKKDIERGMVIAKPGTILPHTLFEGQVYVLTAEEGGRKSGFFKGYQPQFYVRTTDVTGKILDFSYIKQRNPSELSTMHSNPMVCPGDYVNMKIQLITPIAIEKGMRFAIREGGRTVGAGMVLEILE 418          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_MYXXD (Elongation factor Tu 2 OS=Myxococcus xanthus (strain DK 1622) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.680e-62
Identity = 117/180 (65.00%), Postives = 143/180 (79.44%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTVATGRVERG IKVGE V++VGL+ T+   VTGVEMF+K LD+ MAGDN+G L+RG+++ D++RG VLAKPG+ITPHTKF A +YVL KEEGGRH+PFF GYRPQF  RT DVTG V        E  +MVMPGD + + VELI PVA E+ +RFA+REGG+TVGAGV+  I+E
Sbjct:  222 SISGRGTVATGRVERGIIKVGEEVEVVGLRPTQKTVVTGVEMFRKLLDQGMAGDNIGALVRGLKREDMERGQVLAKPGSITPHTKFKAQIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSVKL-----PENVEMVMPGDNIAIEVELITPVAMEKELRFAVREGGRTVGAGVVAEIVE 396          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PROVI (Elongation factor Tu OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=tuf PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.112e-62
Identity = 116/178 (65.17%), Postives = 139/178 (78.09%), Query Frame = -3
Query:  165 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 698
            SI+GRGTV TGR+ERG IK+ E V++VG+++TR   VTG+EMFQK LDE  AGDN GLLLRGV K D++RGMV+AKPGTI PHTKF A VY+LKKEEGGRH+PFF  YRPQF  RT DVTG VS       E  +MVMPGD + + VELI P+A ++G+RFAIREGG+TVGAG +  I
Sbjct:  219 SISGRGTVGTGRIERGRIKINEEVEIVGIRDTRKSVVTGIEMFQKLLDEGQAGDNAGLLLRGVDKNDLERGMVIAKPGTIKPHTKFKAEVYILKKEEGGRHTPFFTNYRPQFYFRTTDVTGAVSL-----PEGVEMVMPGDNLSVEVELIAPIAMDEGLRFAIREGGRTVGAGSVTKI 391          
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_ALKMQ2.743e-6266.30Elongation factor Tu 1 OS=Alkaliphilus metalliredi... [more]
EFTU_STAES3.583e-6266.67Elongation factor Tu OS=Staphylococcus epidermidis... [more]
EFTU_STAEQ3.583e-6266.67Elongation factor Tu OS=Staphylococcus epidermidis... [more]
EFTU_CHLP83.583e-6265.56Elongation factor Tu OS=Chlorobaculum parvum (stra... [more]
EFTU_CALS83.583e-6266.85Elongation factor Tu OS=Caldicellulosiruptor sacch... [more]
EFTU_ANATD3.583e-6266.85Elongation factor Tu OS=Anaerocellum thermophilum ... [more]
EFTU1_MYXXD3.583e-6265.56Elongation factor Tu 1 OS=Myxococcus xanthus (stra... [more]
EFTU_STIHE4.680e-6264.02Elongation factor Tu, chloroplastic OS=Stigeocloni... [more]
EFTU2_MYXXD4.680e-6265.00Elongation factor Tu 2 OS=Myxococcus xanthus (stra... [more]
EFTU_PROVI6.112e-6265.17Elongation factor Tu OS=Prosthecochloris vibriofor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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