CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_DEIGD (Elongation factor Tu OS=Deinococcus geothermalis (strain DSM 11300) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.982e-62
Identity = 117/180 (65.00%), Postives = 142/180 (78.89%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            +ITGRGTVATGRVERG  KVG+ V++VGL++T+  T+TGVEM +K LD+ MAGDNVG+LLRGV + D++RG VLAKPG+ITPHTKF A VYVL K+EGGRHS FF GYRPQF  RT DVTG V     +     +MVMPGD V   VELI P+A E+G+RFAIREGG+TVGAGV+  ++E
Sbjct:  231 TITGRGTVATGRVERGVCKVGDEVEIVGLRDTKKTTITGVEMHRKLLDQGMAGDNVGVLLRGVARDDVERGQVLAKPGSITPHTKFEASVYVLSKDEGGRHSAFFGGYRPQFYFRTTDVTGVV-----ELPAGVEMVMPGDNVSFTVELIKPIAMEEGLRFAIREGGRTVGAGVVTKVLE 405
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_SHISS (Elongation factor Tu 2 OS=Shigella sonnei (strain Ss046) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.982e-62
Identity = 115/179 (64.25%), Postives = 143/179 (79.89%), Query Frame = -3 
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG IKVGE V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  220 SISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_SHIF8 (Elongation factor Tu 2 OS=Shigella flexneri serotype 5b (strain 8401) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.982e-62
Identity = 115/179 (64.25%), Postives = 143/179 (79.89%), Query Frame = -3 
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG IKVGE V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  220 SISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_ECOUT (Elongation factor Tu 2 OS=Escherichia coli (strain UTI89 / UPEC) GN=tuf2 PE=3 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 7.982e-62
Identity = 115/179 (64.25%), Postives = 143/179 (79.89%), Query Frame = -3 
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG IKVGE V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  220 SISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_ECOLC (Elongation factor Tu 2 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.982e-62
Identity = 115/179 (64.25%), Postives = 143/179 (79.89%), Query Frame = -3 
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG IKVGE V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  220 SISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_ECOL5 (Elongation factor Tu 2 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.982e-62
Identity = 115/179 (64.25%), Postives = 143/179 (79.89%), Query Frame = -3 
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG IKVGE V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  220 SISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_ECOK1 (Elongation factor Tu 2 OS=Escherichia coli O1:K1 / APEC GN=tuf2 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.982e-62
Identity = 115/179 (64.25%), Postives = 143/179 (79.89%), Query Frame = -3 
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG IKVGE V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  220 SISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_ECOHS (Elongation factor Tu 2 OS=Escherichia coli O9:H4 (strain HS) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.982e-62
Identity = 115/179 (64.25%), Postives = 143/179 (79.89%), Query Frame = -3 
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG IKVGE V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  220 SISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_ECO24 (Elongation factor Tu 2 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.982e-62
Identity = 115/179 (64.25%), Postives = 143/179 (79.89%), Query Frame = -3 
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG IKVGE V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  220 SISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU1_SHISS (Elongation factor Tu 1 OS=Shigella sonnei (strain Ss046) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.982e-62
Identity = 115/179 (64.25%), Postives = 143/179 (79.89%), Query Frame = -3 
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG IKVGE V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  220 SISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_DEIGD7.982e-6265.00Elongation factor Tu OS=Deinococcus geothermalis (... [more]
EFTU2_SHISS7.982e-6264.25Elongation factor Tu 2 OS=Shigella sonnei (strain ... [more]
EFTU2_SHIF87.982e-6264.25Elongation factor Tu 2 OS=Shigella flexneri seroty... [more]
EFTU2_ECOUT7.982e-6264.25Elongation factor Tu 2 OS=Escherichia coli (strain... [more]
EFTU2_ECOLC7.982e-6264.25Elongation factor Tu 2 OS=Escherichia coli (strain... [more]
EFTU2_ECOL57.982e-6264.25Elongation factor Tu 2 OS=Escherichia coli O6:K15:... [more]
EFTU2_ECOK17.982e-6264.25Elongation factor Tu 2 OS=Escherichia coli O1:K1 /... [more]
EFTU2_ECOHS7.982e-6264.25Elongation factor Tu 2 OS=Escherichia coli O9:H4 (... [more]
EFTU2_ECO247.982e-6264.25Elongation factor Tu 2 OS=Escherichia coli O139:H2... [more]
EFTU1_SHISS7.982e-6264.25Elongation factor Tu 1 OS=Shigella sonnei (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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