CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_STAAB (Elongation factor Tu OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.778e-61
Identity = 119/180 (66.11%), Postives = 141/180 (78.33%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG IKVGE V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQF  RT DVTG V        E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  220 SITGRGTVATGRVERGQIKVGEEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_STAA9 (Elongation factor Tu OS=Staphylococcus aureus (strain JH9) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.778e-61
Identity = 119/180 (66.11%), Postives = 141/180 (78.33%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG IKVGE V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQF  RT DVTG V        E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  220 SITGRGTVATGRVERGQIKVGEEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_STAA8 (Elongation factor Tu OS=Staphylococcus aureus (strain NCTC 8325) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.778e-61
Identity = 119/180 (66.11%), Postives = 141/180 (78.33%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG IKVGE V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQF  RT DVTG V        E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  220 SITGRGTVATGRVERGQIKVGEEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_STAA3 (Elongation factor Tu OS=Staphylococcus aureus (strain USA300) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.778e-61
Identity = 119/180 (66.11%), Postives = 141/180 (78.33%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG IKVGE V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQF  RT DVTG V        E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  220 SITGRGTVATGRVERGQIKVGEEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_STAA2 (Elongation factor Tu OS=Staphylococcus aureus (strain JH1) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.778e-61
Identity = 119/180 (66.11%), Postives = 141/180 (78.33%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG IKVGE V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQF  RT DVTG V        E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  220 SITGRGTVATGRVERGQIKVGEEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_STAA1 (Elongation factor Tu OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.778e-61
Identity = 119/180 (66.11%), Postives = 141/180 (78.33%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG IKVGE V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQF  RT DVTG V        E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  220 SITGRGTVATGRVERGQIKVGEEVEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PSEAE (Elongation factor Tu OS=Pseudomonas aeruginosa GN=tufA PE=3 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.778e-61
Identity = 119/180 (66.11%), Postives = 138/180 (76.67%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG IKV E V++VG+K T   T TGVEMF+K LDE  AG+NVG+LLRG ++ D++RG VLAKPGTI PHTKF   VYVL KEEGGRH+PFF GYRPQF  RT DVTG       +  E  +MVMPGD +KMVV LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  223 SISGRGTVVTGRVERGIIKVQEEVEIVGIKATTKTTCTGVEMFRKLLDEGRAGENVGILLRGTKREDVERGQVLAKPGTIKPHTKFECEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIKMVVTLIAPIAMEDGLRFAIREGGRTVGAGVVAKIIE 397
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PSEAB (Elongation factor Tu OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.778e-61
Identity = 119/180 (66.11%), Postives = 138/180 (76.67%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG IKV E V++VG+K T   T TGVEMF+K LDE  AG+NVG+LLRG ++ D++RG VLAKPGTI PHTKF   VYVL KEEGGRH+PFF GYRPQF  RT DVTG       +  E  +MVMPGD +KMVV LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  223 SISGRGTVVTGRVERGIIKVQEEVEIVGIKATTKTTCTGVEMFRKLLDEGRAGENVGILLRGTKREDVERGQVLAKPGTIKPHTKFECEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIKMVVTLIAPIAMEDGLRFAIREGGRTVGAGVVAKIIE 397
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PSEA7 (Elongation factor Tu OS=Pseudomonas aeruginosa (strain PA7) GN=tuf1 PE=3 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.778e-61
Identity = 119/180 (66.11%), Postives = 138/180 (76.67%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG IKV E V++VG+K T   T TGVEMF+K LDE  AG+NVG+LLRG ++ D++RG VLAKPGTI PHTKF   VYVL KEEGGRH+PFF GYRPQF  RT DVTG       +  E  +MVMPGD +KMVV LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  223 SISGRGTVVTGRVERGIIKVQEEVEIVGIKATTKTTCTGVEMFRKLLDEGRAGENVGILLRGTKREDVERGQVLAKPGTIKPHTKFECEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIKMVVTLIAPIAMEDGLRFAIREGGRTVGAGVVAKIIE 397
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_KOSOT (Elongation factor Tu OS=Kosmotoga olearia (strain TBF 19.5.1) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.778e-61
Identity = 122/181 (67.40%), Postives = 141/181 (77.90%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTV TGR+ERG I VG+ V++VGL  E R   VTGVEMF+K LDE +AGDNVG LLRGV K +++RG VLAKPG+ITPH KF A +YVLKKEEGGRH+PF  GYRPQF +RT DVTG     + D  E  +MVMPGD V M VELI PVA E+GMRFA+REGG+TVGAGV+  IIE
Sbjct:  223 SITGRGTVVTGRIERGVIHVGDEVEIVGLSYEVRKTVVTGVEMFRKLLDEGVAGDNVGCLLRGVGKDEVKRGQVLAKPGSITPHKKFKANIYVLKKEEGGRHTPFTKGYRPQFYIRTADVTGE----LVDLPEGVEMVMPGDNVVMTVELIYPVAIEKGMRFAVREGGRTVGAGVVSEIIE 399
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STAAB1.778e-6166.11Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAA91.778e-6166.11Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAA81.778e-6166.11Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAA31.778e-6166.11Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAA21.778e-6166.11Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAA11.778e-6166.11Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_PSEAE1.778e-6166.11Elongation factor Tu OS=Pseudomonas aeruginosa GN=... [more]
EFTU_PSEAB1.778e-6166.11Elongation factor Tu OS=Pseudomonas aeruginosa (st... [more]
EFTU_PSEA71.778e-6166.11Elongation factor Tu OS=Pseudomonas aeruginosa (st... [more]
EFTU_KOSOT1.778e-6167.40Elongation factor Tu OS=Kosmotoga olearia (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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