CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PORPU (Elongation factor Tu, chloroplastic OS=Porphyra purpurea GN=tufA PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.407e-71
Identity = 126/180 (70.00%), Postives = 154/180 (85.56%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG IKVG+T+++VGL+ETR  T+TG+EMFQKTL+E +AGDN+G+LLRGVQK DI+RGMVLAKPGTITPHT+F A VY+L KEEGGRH+PFF GYRPQF +RT DVTG ++    D   +++MVMPGDR+KM  ELI  +A EQGMRFAIREGG+TVGAGV+  I++
Sbjct:  230 SITGRGTVATGRIERGIIKVGDTIEIVGLRETRTTTITGLEMFQKTLEEGLAGDNIGILLRGVQKKDIERGMVLAKPGTITPHTQFEAEVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGTINQFTADDGTDAEMVMPGDRIKMTAELINAIAIEQGMRFAIREGGRTVGAGVVSKILK 409
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SYNSC (Elongation factor Tu OS=Synechococcus sp. (strain CC9605) GN=tuf PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.229e-70
Identity = 128/180 (71.11%), Postives = 151/180 (83.89%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGE +++VG+K+TR  TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++    +     +MVMPGD ++M  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  220 SITGRGTVATGRIERGIVKVGEEIEIVGIKDTRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGQVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVEMVMPGDNIQMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIE 399
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SYNR3 (Elongation factor Tu OS=Synechococcus sp. (strain RCC307) GN=tuf PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.229e-70
Identity = 129/180 (71.67%), Postives = 151/180 (83.89%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGE +++VG+K+TR  TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++   +      +MVMPGD +KM  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  220 SITGRGTVATGRIERGIVKVGEEIEIVGIKDTRKSTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTDRDGGNVEMVMPGDNIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVTKIIE 399
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PROMP (Elongation factor Tu OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=tuf PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.229e-70
Identity = 131/180 (72.78%), Postives = 151/180 (83.89%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGE V++VG+++TR  TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++    D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  220 SITGRGTVATGRIERGKVKVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGANVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIE 399
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_GLOVI (Elongation factor Tu OS=Gloeobacter violaceus GN=tufA PE=3 SV=2)

HSP 1 Score: 265.774 bits (678), Expect = 1.605e-70
Identity = 123/180 (68.33%), Postives = 156/180 (86.67%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGET++LVG++ TR+ TVTG+EMFQK+LDE +AGDN+G+LLRG++K D++RGMVLAKPG+ITPHT+F   VY+L KEEGGRH+PFFAGYRPQF +RT DVTG +    +D+ + ++MVMPGDR+KM VELI P+A E GMRFAIREGG+TVGAGV+  I++
Sbjct:  230 SITGRGTVATGRIERGKVKVGETIELVGIRGTRSTTVTGLEMFQKSLDEGLAGDNIGVLLRGIKKEDVERGMVLAKPGSITPHTQFEGEVYILSKEEGGRHTPFFAGYRPQFYVRTTDVTGTIVTFTDDEGKSAEMVMPGDRIKMTVELINPIAIEDGMRFAIREGGRTVGAGVVSKILK 409
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_EMIHU (Elongation factor Tu, chloroplastic OS=Emiliania huxleyi GN=tufA PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.605e-70
Identity = 126/180 (70.00%), Postives = 152/180 (84.44%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +K+G+T+++VGLK+T+  TVTG+EMFQKTLDE MAGDNVG+L+RGVQK DI+RGMVLA+PGTI+PH KF A VYVL K+EGGRH+PFF GYRPQF +RT DVTG +     D    ++MVMPGDR+KM  ELI P+A EQGMRFAIREGG+TVGAGV+  I+E
Sbjct:  228 SITGRGTVATGRIERGILKIGDTIEIVGLKDTQTTTVTGIEMFQKTLDEGMAGDNVGILIRGVQKTDIERGMVLAQPGTISPHKKFEAEVYVLGKDEGGRHTPFFTGYRPQFYVRTIDVTGTIVQFTGDDGSAAEMVMPGDRIKMTAELINPIAIEQGMRFAIREGGRTVGAGVVSKILE 407
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PROMT (Elongation factor Tu OS=Prochlorococcus marinus (strain NATL2A) GN=tuf PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.737e-70
Identity = 129/180 (71.67%), Postives = 151/180 (83.89%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG + VGE V++VG+++TR  TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL K G+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++   +D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  220 SITGRGTVATGRIERGKVTVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKKGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELIAPVAIEQGMRFAIREGGRTIGAGVVSKIIE 399
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PROM1 (Elongation factor Tu OS=Prochlorococcus marinus (strain NATL1A) GN=tuf PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.737e-70
Identity = 129/180 (71.67%), Postives = 151/180 (83.89%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG + VGE V++VG+++TR  TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL K G+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++   +D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  220 SITGRGTVATGRIERGKVTVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKKGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELIAPVAIEQGMRFAIREGGRTIGAGVVSKIIE 399
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PROM2 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9215) GN=tuf PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.575e-70
Identity = 129/180 (71.67%), Postives = 152/180 (84.44%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVGE V++VG+++TR  TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHT+F   VYVLKKEEGGRH+PFFAGYRPQF +RT DVTG+++   +D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  220 SITGRGTVATGRIERGKVKVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTQFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIK 399
[Close]
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_ANASP (Elongation factor Tu OS=Anabaena sp. (strain PCC 7120) GN=tuf PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.669e-70
Identity = 124/180 (68.89%), Postives = 155/180 (86.11%), Query Frame = -3 
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KVG+ V+LVG+++TRN TVTG+EMF+K+LDE MAGDN G+LLRG+QKADI+RGMVLAKPG+ITPHT+F   VYVL ++EGGR +PFFAGYRPQF +RT DVTG +    +D+ E  +MVMPGDR+K+ VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  230 SITGRGTVATGRIERGKVKVGDVVELVGIRDTRNTTVTGIEMFKKSLDEGMAGDNAGVLLRGIQKADIERGMVLAKPGSITPHTQFEGEVYVLTEKEGGRKTPFFAGYRPQFYVRTTDVTGTIKAFTSDEGETVEMVMPGDRIKVTVELINPIAIEQGMRFAIREGGRTIGAGVVSKIVK 409
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PORPU9.407e-7170.00Elongation factor Tu, chloroplastic OS=Porphyra pu... [more]
EFTU_SYNSC1.229e-7071.11Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNR31.229e-7071.67Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_PROMP1.229e-7072.78Elongation factor Tu OS=Prochlorococcus marinus su... [more]
EFTU_GLOVI1.605e-7068.33Elongation factor Tu OS=Gloeobacter violaceus GN=t... [more]
EFTU_EMIHU1.605e-7070.00Elongation factor Tu, chloroplastic OS=Emiliania h... [more]
EFTU_PROMT2.737e-7071.67Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROM12.737e-7071.67Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROM23.575e-7071.67Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_ANASP4.669e-7068.89Elongation factor Tu OS=Anabaena sp. (strain PCC 7... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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