CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_POLSJ (Elongation factor Tu OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 111/179 (62.01%), Postives = 137/179 (76.54%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG IKVGE +++VG+ +T+  T TGVEMF+K LD+  AGDNVG+LLRG ++ D+QRG VL KPG+I PHT F   +YVL K+EGGRH+PFF  YRPQF  RT DVTG +     +  E  +MVMPGD V + V+LI P+A E+G+RFAIREGGKTVGAGV+  II
Sbjct:  222 SISGRGTVVTGRVERGVIKVGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVQRGQVLCKPGSIKPHTHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAI-----ELPEGKEMVMPGDNVSITVKLINPIAMEEGLRFAIREGGKTVGAGVVAKII 395          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_HELAH (Elongation factor Tu OS=Helicobacter acinonychis (strain Sheeba) GN=tuf PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 112/180 (62.22%), Postives = 140/180 (77.78%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI GRGTV TGR+ERG +KVG+ V++VG++ T+  TVTGVEMF+K LD+  AGDNVG+LLRG +K +++RGMVL KPG+ITPH KF   +YVL KEEGGRH+PFF  YRPQF +RT DVTG ++       E  +MVMPGD VK+ VELI  +A E G +FAIREGG+TVGAGV+ +IIE
Sbjct:  225 SIAGRGTVVTGRIERGMVKVGDEVEIVGIRATQKTTVTGVEMFRKELDKGEAGDNVGVLLRGTKKEEVERGMVLCKPGSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITL-----PEGVEMVMPGDNVKITVELINSIALELGTKFAIREGGRTVGAGVVSNIIE 399          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_GLUDA (Elongation factor Tu OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=tuf PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 111/178 (62.36%), Postives = 138/178 (77.53%), Query Frame = -3
Query:  165 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 698
            SI+GRGTV TGRVERG + VG+ +++VGL+ T+  TVTGVEMF+K LD   AGDN+G L+RG ++ D++RG VLAKPG+ITPHTKF A  Y+L KEEGGRH+PFF  YRPQF  RT DVTG V        E ++MVMPGD + M VELI P+A ++G+RFAIREGG+TVGAGV+ SI
Sbjct:  222 SISGRGTVVTGRVERGVVNVGDEIEIVGLRATQKTTVTGVEMFRKLLDRGEAGDNIGALVRGTKREDVERGQVLAKPGSITPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNIAMDVELIAPIAMDEGLRFAIREGGRTVGAGVVASI 394          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_FRASN (Elongation factor Tu OS=Frankia sp. (strain EAN1pec) GN=tuf PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 113/181 (62.43%), Postives = 141/181 (77.90%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            +ITGRGTV TGR+ERG +KV ETV++VG+K ET   TVTGVEMF+K LDE  AGDNVGLLLRG+++ D++RG V+ KP +ITPHT F A VY+L K+EGGRH+PFF  YRPQF  RT DVTG V+       E ++MVMPGD  +M VELI P+A E+G+RFAIREGG+TVGAG +  +I+
Sbjct:  222 TITGRGTVVTGRIERGIVKVNETVEIVGIKPETTTTTVTGVEMFRKLLDEGQAGDNVGLLLRGIKREDVERGQVIVKPKSITPHTVFEARVYILNKDEGGRHTPFFKNYRPQFYFRTTDVTGVVTL-----PEGTEMVMPGDNTEMTVELIQPIAMEEGLRFAIREGGRTVGAGQVLKVIK 397          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_FRASC (Elongation factor Tu OS=Frankia sp. (strain CcI3) GN=tuf PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 113/181 (62.43%), Postives = 142/181 (78.45%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            +ITGRGTV TGRVERG +KV ETV++VG+K ET + TVTGVEMF+K LDE  AGDNVGLLLRG+++ D++RG V+ KP +ITPHT F A VY+L K+EGGRH+PFF  YRPQF  RT DVTG V+       E ++MVMPGD  +M VELI P+A E+G+RFAIREGG+TVGAG +  +++
Sbjct:  222 TITGRGTVVTGRVERGIVKVNETVEIVGIKPETTSTTVTGVEMFRKLLDEGRAGDNVGLLLRGIKREDVERGQVIVKPKSITPHTVFEARVYILNKDEGGRHTPFFKNYRPQFYFRTTDVTGVVTL-----PEGTEMVMPGDNTEMTVELIQPIAMEEGLRFAIREGGRTVGAGQVTKVLK 397          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CLOB8 (Elongation factor Tu OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 112/181 (61.88%), Postives = 141/181 (77.90%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGL-KETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            +ITGRGTVATGRVE G + VG+ V++VGL +E +   VTG+EMF+K LDEA AGDN+G LLRGVQ+ DI+RG VL+KP ++ PHTKF+  VYVLKKEEGGRH+PFF GYRPQF  RT DVTG +        +  +MVMPGD + M VELI P+A ++G+RFAIREGG+TVG+GV+  I+E
Sbjct:  222 TITGRGTVATGRVEAGVLHVGDEVEIVGLTEEKKKVVVTGIEMFRKLLDEAQAGDNIGALLRGVQRTDIERGQVLSKPNSVHPHTKFVGQVYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIKL-----PDGMEMVMPGDHIDMNVELITPIAMDEGLRFAIREGGRTVGSGVVTKIVE 397          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_ACIBT (Elongation factor Tu OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=tuf1 PE=3 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = -3
Query:  165 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 698
            SI+GRGTV TGRVE G IKVGE V++VG+K+T   TVTGVEMF+K LDE  AG+N G+LLRG ++ ++QRG VLAKPGTI PHTKF A VYVL KEEGGRH+PF  GYRPQF  RT DVTG +        E  +MVMPGD V+M VELI P+A + G+RFAIREGG+TVGAGV+  +
Sbjct:  222 SISGRGTVVTGRVEAGIIKVGEEVEIVGIKDTVKTTVTGVEMFRKLLDEGRAGENCGILLRGTKREEVQRGQVLAKPGTIKPHTKFDAEVYVLSKEEGGRHTPFLNGYRPQFYFRTTDVTGAIQL-----KEGVEMVMPGDNVEMSVELIHPIAMDPGLRFAIREGGRTVGAGVVAKV 394          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_ACIB3 (Elongation factor Tu OS=Acinetobacter baumannii (strain AB307-0294) GN=tuf PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = -3
Query:  165 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 698
            SI+GRGTV TGRVE G IKVGE V++VG+K+T   TVTGVEMF+K LDE  AG+N G+LLRG ++ ++QRG VLAKPGTI PHTKF A VYVL KEEGGRH+PF  GYRPQF  RT DVTG +        E  +MVMPGD V+M VELI P+A + G+RFAIREGG+TVGAGV+  +
Sbjct:  222 SISGRGTVVTGRVEAGIIKVGEEVEIVGIKDTVKTTVTGVEMFRKLLDEGRAGENCGILLRGTKREEVQRGQVLAKPGTIKPHTKFDAEVYVLSKEEGGRHTPFLNGYRPQFYFRTTDVTGAIQL-----KEGVEMVMPGDNVEMSVELIHPIAMDPGLRFAIREGGRTVGAGVVAKV 394          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_PELCD (Elongation factor Tu 2 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 113/180 (62.78%), Postives = 140/180 (77.78%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTVATGRVERG + V + +++VG+KET    VTGVEMF+K LD+  AGDN+G+LLRGV++ DI+RG VLAKPG+ITPHTKF A  Y+L KEEGGRH+PFF GYRPQF  RT DVTG     + +  E ++MVMPGD   M V LI P+A ++ +RFAIREGG+TVGAGV+  IIE
Sbjct:  225 SISGRGTVATGRVERGIVCVQDEIEIVGMKETTKTVVTGVEMFRKLLDQGQAGDNIGVLLRGVKREDIERGQVLAKPGSITPHTKFKAEAYILTKEEGGRHTPFFNGYRPQFYFRTTDVTG-----ICELAEGTEMVMPGDNASMTVNLITPIAMDKELRFAIREGGRTVGAGVVSDIIE 399          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_CAUSK (Elongation factor Tu 2 OS=Caulobacter sp. (strain K31) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.664e-59
Identity = 108/180 (60.00%), Postives = 139/180 (77.22%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGR+E+G +KVGE V++VG++  +  T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VL KPG+ITPHTKF+A  Y+L KEEGGRH+PFF  YRPQF  RT DVTG +        E  +M+MPGD  ++ VELI P+A +QG+RFAIREGG+TVGAGV+  I+E
Sbjct:  222 SISGRGTVVTGRIEKGVVKVGEEVEIVGIRAVQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLCKPGSITPHTKFVAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIIKL-----REGVEMIMPGDNAELDVELITPIAMDQGLRFAIREGGRTVGAGVVAKIVE 396          
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_POLSJ1.664e-5962.01Elongation factor Tu OS=Polaromonas sp. (strain JS... [more]
EFTU_HELAH1.664e-5962.22Elongation factor Tu OS=Helicobacter acinonychis (... [more]
EFTU_GLUDA1.664e-5962.36Elongation factor Tu OS=Gluconacetobacter diazotro... [more]
EFTU_FRASN1.664e-5962.43Elongation factor Tu OS=Frankia sp. (strain EAN1pe... [more]
EFTU_FRASC1.664e-5962.43Elongation factor Tu OS=Frankia sp. (strain CcI3) ... [more]
EFTU_CLOB81.664e-5961.88Elongation factor Tu OS=Clostridium beijerinckii (... [more]
EFTU_ACIBT1.664e-5964.61Elongation factor Tu OS=Acinetobacter baumannii (s... [more]
EFTU_ACIB31.664e-5964.61Elongation factor Tu OS=Acinetobacter baumannii (s... [more]
EFTU2_PELCD1.664e-5962.78Elongation factor Tu 2 OS=Pelobacter carbinolicus ... [more]
EFTU2_CAUSK1.664e-5960.00Elongation factor Tu 2 OS=Caulobacter sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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