CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU1_SHEB9 (Elongation factor Tu 1 OS=Shewanella baltica (strain OS195) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 112/179 (62.57%), Postives = 139/179 (77.65%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG +KVG+ V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  220 SISGRGTVVTGRVERGIVKVGDEVEIVGVRTTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLAKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU1_SHEB5 (Elongation factor Tu 1 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 112/179 (62.57%), Postives = 139/179 (77.65%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG +KVG+ V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  220 SISGRGTVVTGRVERGIVKVGDEVEIVGVRTTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLAKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU1_SERP5 (Elongation factor Tu 1 OS=Serratia proteamaculans (strain 568) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.174e-59
Identity = 112/179 (62.57%), Postives = 140/179 (78.21%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG +KVGE V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG+++ DI+RG VLAKPG+I PHT+F + VY+L K+EGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD V M V LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  220 SISGRGTVVTGRVERGIVKVGEEVEIVGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVLAKPGSIKPHTQFDSEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVNMKVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SPHAL (Elongation factor Tu OS=Sphingopyxis alaskensis GN=tuf PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.839e-59
Identity = 109/178 (61.24%), Postives = 141/178 (79.21%), Query Frame = -3
Query:  165 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 698
            SI+GRGTV TGRVE G +KVGE V++VG+K+T+   VTGVEMF+K LD+  AGDN+G L+RGV + +++RG VLAKPG+ITPHT+F + VYVL K+EGGRH+PFFA YRPQF  RT DVTG V        E ++MVMPGD V++ V+LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct:  223 SISGRGTVVTGRVETGVVKVGEEVEIVGIKDTKKTVVTGVEMFRKLLDQGQAGDNIGALIRGVGREEVERGQVLAKPGSITPHTEFTSEVYVLSKDEGGRHTPFFANYRPQFYFRTTDVTGEVIL-----PEGTEMVMPGDNVQLSVKLIAPIAMDPGLRFAIREGGRTVGAGVVATV 395          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SILST (Elongation factor Tu OS=Silicibacter sp. (strain TM1040) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.839e-59
Identity = 110/179 (61.45%), Postives = 136/179 (75.98%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG I VG+ +++VG+K+T   T TGVEMF+K LD   AGDN+G LLRG+ +  ++RG VL KPG++TPHTKF A  Y+L KEEGGRH+PFFA YRPQF  RT DVTG V+       E ++MVMPGD +K  VELI P+A E G+RFAIREGG+TVGAGV+  I+
Sbjct:  217 SISGRGTVVTGRVERGVINVGDNIEIVGIKDTTTTTCTGVEMFRKLLDRGEAGDNIGALLRGIDREAVERGQVLCKPGSVTPHTKFEAEAYILTKEEGGRHTPFFANYRPQFYFRTTDVTGTVTL-----PEGTEMVMPGDNLKFEVELIAPIAMEDGLRFAIREGGRTVGAGVVSKIL 390          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SACD2 (Elongation factor Tu OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.839e-59
Identity = 110/179 (61.45%), Postives = 140/179 (78.21%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG +KVGE +++VG+++T   T TGVEMF+K LDE  AG+NVG+LLRG ++ D++RG VL+KPG++TPHT F + +YVL K+EGGRH+PFF GYRPQF  RT DVTG       +  E  +MVMPGD V+M V LI P+A E+G+RFAIREGG+TVGAGV+  II
Sbjct:  233 SISGRGTVVTGRVERGIVKVGEELEIVGIRDTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDDVERGQVLSKPGSVTPHTTFQSEIYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGAC-----ELPEGVEMVMPGDNVQMTVTLIAPIAMEEGLRFAIREGGRTVGAGVVAKII 406          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_RHOPB (Elongation factor Tu OS=Rhodopseudomonas palustris (strain BisB18) GN=tuf PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.839e-59
Identity = 110/180 (61.11%), Postives = 139/180 (77.22%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG +KVGE +++VGL++T+   VTGVEMF+K LD+  AGDN+G LLRG ++ +++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQF  RT DVTG V        E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  222 SISGRGTVVTGRVERGIVKVGEEIEIVGLRDTQKTIVTGVEMFRKLLDQGQAGDNIGALLRGTKREEVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVHL-----PEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PSYCK (Elongation factor Tu OS=Psychrobacter cryohalolentis (strain K5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.839e-59
Identity = 109/179 (60.89%), Postives = 142/179 (79.33%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVE G ++VG+ +++VG+++T+  T TGVEMF+K LDE  AG+N G+LLRG ++ D+QRG VLAKPG+ITPHTKF A VYVL KEEGGRH+PF  GYRPQF  RT DVTG +        + ++MVMPGD V+M VELI P+A ++G+RFAIREGG+TVGAGV+ +++
Sbjct:  222 SISGRGTVVTGRVESGIVRVGDEIEIVGIRDTQKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKREDVQRGQVLAKPGSITPHTKFDAEVYVLSKEEGGRHTPFLNGYRPQFYFRTTDVTGAIQL-----QDGTEMVMPGDNVEMGVELIHPIAMDKGLRFAIREGGRTVGAGVVANVL 395          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_POLSQ (Elongation factor Tu OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.839e-59
Identity = 110/179 (61.45%), Postives = 140/179 (78.21%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGR+ERG +KVGE ++++G+K T   T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VLAKPG+ITPHT F A VY+L K+EGGRH+PFF  YRPQF  RT DVTG +      KD+E  MVMPGD V + V+LI P+A E+G+RFAIREGG+TVGAGV+  I+
Sbjct:  222 SISGRGTVVTGRIERGIVKVGEEIEIIGIKPTLKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREEVERGQVLAKPGSITPHTHFTAEVYILGKDEGGRHTPFFNNYRPQFYFRTTDVTGSIEL---PKDKE--MVMPGDNVTITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIL 395          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_NITHX (Elongation factor Tu OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=tuf PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.839e-59
Identity = 111/180 (61.67%), Postives = 138/180 (76.67%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG +KVGE +++VG++ T+  TVTGVEMF+K LD+  AGDN+G LLRG ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQF  RT DVTG V          ++MVMPGD V M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  222 SISGRGTVVTGRVERGIVKVGEEIEIVGIRPTQKTTVTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVHL-----PAGTEMVMPGDNVAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_SHEB92.174e-5962.57Elongation factor Tu 1 OS=Shewanella baltica (stra... [more]
EFTU1_SHEB52.174e-5962.57Elongation factor Tu 1 OS=Shewanella baltica (stra... [more]
EFTU1_SERP52.174e-5962.57Elongation factor Tu 1 OS=Serratia proteamaculans ... [more]
EFTU_SPHAL2.839e-5961.24Elongation factor Tu OS=Sphingopyxis alaskensis GN... [more]
EFTU_SILST2.839e-5961.45Elongation factor Tu OS=Silicibacter sp. (strain T... [more]
EFTU_SACD22.839e-5961.45Elongation factor Tu OS=Saccharophagus degradans (... [more]
EFTU_RHOPB2.839e-5961.11Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_PSYCK2.839e-5960.89Elongation factor Tu OS=Psychrobacter cryohalolent... [more]
EFTU_POLSQ2.839e-5961.45Elongation factor Tu OS=Polynucleobacter sp. (stra... [more]
EFTU_NITHX2.839e-5961.67Elongation factor Tu OS=Nitrobacter hamburgensis (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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