CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_WOLTR (Elongation factor Tu 2 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.843e-59
Identity = 107/180 (59.44%), Postives = 143/180 (79.44%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGR+E+G IK+G+ ++++GLK T+  T TGVEMF+K L++  AG NVG+LLRG ++ +++RG VLAKPGTITPH KF A VY+LKKEEGGRH+PFFA Y+PQF +RT DVTG +  +     E  +MVMPGD V + VEL +P+A ++G+RFAIREGG+TVG+GV+  I+E
Sbjct:  216 SISGRGTVVTGRIEKGEIKIGDEIEIIGLKATQKTTCTGVEMFKKLLEKGSAGLNVGILLRGTKREEVERGQVLAKPGTITPHRKFKAEVYILKKEEGGRHTPFFANYQPQFYLRTTDVTGSIKLL-----EGKEMVMPGDNVSIEVELQVPIAMDKGLRFAIREGGRTVGSGVVSEILE 390          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_NITEC (Elongation factor Tu 2 OS=Nitrosomonas eutropha (strain C91) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.843e-59
Identity = 110/180 (61.11%), Postives = 138/180 (76.67%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG +KVG+ +++VGL+ T   T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VLAKPG+I PHTKF A +YVL KEEGGRH+PFFAGYRPQF  RT DVTG +     +     +MVMPGD + + V LI P+A   G+RFAIREGG+TVGAGV+  +IE
Sbjct:  222 SISGRGTVVTGRVERGIVKVGDEIEIVGLRPTIKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREEVERGQVLAKPGSILPHTKFSAEIYVLSKEEGGRHTPFFAGYRPQFYFRTTDVTGSI-----ELPAGVEMVMPGDNISVNVNLIAPIAMSDGLRFAIREGGRTVGAGVVAKVIE 396          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU1_WOLTR (Elongation factor Tu 1 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.843e-59
Identity = 107/180 (59.44%), Postives = 143/180 (79.44%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGR+E+G IK+G+ ++++GLK T+  T TGVEMF+K L++  AG NVG+LLRG ++ +++RG VLAKPGTITPH KF A VY+LKKEEGGRH+PFFA Y+PQF +RT DVTG +  +     E  +MVMPGD V + VEL +P+A ++G+RFAIREGG+TVG+GV+  I+E
Sbjct:  223 SISGRGTVVTGRIEKGEIKIGDEIEIIGLKATQKTTCTGVEMFKKLLEKGSAGLNVGILLRGTKREEVERGQVLAKPGTITPHRKFKAEVYILKKEEGGRHTPFFANYQPQFYLRTTDVTGSIKLL-----EGKEMVMPGDNVSIEVELQVPIAMDKGLRFAIREGGRTVGSGVVSEILE 397          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SYNFM (Elongation factor Tu OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.325e-59
Identity = 115/180 (63.89%), Postives = 138/180 (76.67%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG I+V E V++VG + T     TGVEMF+KTLD+  AGDNVG+LLRG ++ +++RG V+AKPG+ITPHTKF A VYVLKKEEGGRH+PFF GYRPQF  RT DVTG ++       E  +MVMPGD +   V LI PVA E+ +RFAIREGG+TVGAGVI  IIE
Sbjct:  223 SISGRGTVVTGRVERGVIRVSEDVEIVGFRPTFKTVCTGVEMFRKTLDQGQAGDNVGVLLRGTKRDEVERGQVVAKPGSITPHTKFKAEVYVLKKEEGGRHTPFFPGYRPQFYFRTTDVTGIMTL-----PEGVEMVMPGDNISTEVHLITPVALEKELRFAIREGGRTVGAGVITEIIE 397          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SHEHH (Elongation factor Tu OS=Shewanella halifaxensis (strain HAW-EB4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.325e-59
Identity = 109/179 (60.89%), Postives = 138/179 (77.09%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI GRGTV TGRVERG ++VG+ V++VG+K+T   T TGVEMF+K LDE  AG+N G+LLRG+++ D++RG VLA PG+ITPHT F + +YVL KEEGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD V M V LI P+A ++G+RFAIREGG+TVGAGV+  I+
Sbjct:  220 SIAGRGTVVTGRVERGIVRVGDEVEIVGIKDTTKSTCTGVEMFRKLLDEGRAGENCGVLLRGIKREDVERGQVLAAPGSITPHTTFKSEIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVAMTVTLIAPIAMDEGLRFAIREGGRTVGAGVVAEIV 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_ROSDO (Elongation factor Tu OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.325e-59
Identity = 110/180 (61.11%), Postives = 136/180 (75.56%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG I VG+ +++VG+K+T++ T TGVEMF+K LD   AGDN+G LLRG+ +  ++RG VL KPG++ PHTKF A  Y+L K+EGGRH+PFFA YRPQF  RT DVTG V        E ++MVMPGD V   VELI P+A EQG+RFAIREGG+TVGAGV+  I E
Sbjct:  217 SISGRGTVVTGRVERGVINVGDNIEIVGIKDTQSTTCTGVEMFRKLLDRGEAGDNIGALLRGIDREAVERGQVLCKPGSVKPHTKFEAEAYILTKDEGGRHTPFFANYRPQFYFRTTDVTGTVQLA-----EGTEMVMPGDNVSFGVELIAPIAMEQGLRFAIREGGRTVGAGVVSKITE 391          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_RHIRD (Elongation factor Tu OS=Rhizobium radiobacter GN=tufA PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.325e-59
Identity = 109/180 (60.56%), Postives = 139/180 (77.22%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG +KVGE V++VG++ T   TVTGVEMF+K LD+  AGDN+G L+RGV +  ++RG +L KPG++ PH KF+A  Y+L KEEGGRH+PFF  YRPQF  RT DVTG VS       E ++MVMPGD V + VELI+P+A E+ +RFAIREGG+TVGAG++ SI+E
Sbjct:  217 SISGRGTVVTGRVERGIVKVGEEVEIVGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALVRGVTRDGVERGQILCKPGSVKPHKKFMAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIVSL-----PEGTEMVMPGDNVTVEVELIVPIAMEEKLRFAIREGGRTVGAGIVASIVE 391          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_DESRM (Elongation factor Tu OS=Desulfotomaculum reducens (strain MI-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.325e-59
Identity = 118/181 (65.19%), Postives = 139/181 (76.80%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKET-RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG +KV + V++VGL E  R   VTGVEMF+K LD A AGDN+G LLRGV + +I+RG VLAKPG+I PHTK+ A VYVL KEEGGRH+PFF GYRPQF  RT DVTG V        E  +MVMPGD +K+ V+LI P+A E+G+RFAIREGG+TVGAGV+  I E
Sbjct:  225 SITGRGTVATGRVERGQVKVQDEVEIVGLNEKPRKTVVTGVEMFRKLLDFAQAGDNIGALLRGVDRKEIERGQVLAKPGSINPHTKYSAEVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGIVQL-----PEGVEMVMPGDNIKVDVDLITPIAIEEGLRFAIREGGRTVGAGVVTGIRE 400          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CAUCR (Elongation factor Tu OS=Caulobacter crescentus GN=tufA PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.325e-59
Identity = 109/180 (60.56%), Postives = 138/180 (76.67%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG +KVGE V++VG++  +  T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VL KPG+ITPHTKF+A  Y+L KEEGGRH+PFF  YRPQF  RT DVTG +        E  +M+MPGD  ++ VELI P+A E+ +RFAIREGG+TVGAGV+  I+E
Sbjct:  222 SISGRGTVVTGRVERGIVKVGEEVEIVGIRPVQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLCKPGSITPHTKFVAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIIKL-----REGVEMIMPGDNAELDVELITPIAMEEKLRFAIREGGRTVGAGVVAKIVE 396          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CAMJR (Elongation factor Tu OS=Campylobacter jejuni (strain RM1221) GN=tuf PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.325e-59
Identity = 109/180 (60.56%), Postives = 142/180 (78.89%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGR+E+G +KVG+T+++VG+K+T+  TVTGVEMF+K +D+  AGDNVG+LLRG +K ++ RGMVLAKP +ITPHT F A VY+L K+EGGRH+PFF  YRPQF +RT DVTG +        +  +MVMPG+ V++ V LI PVA E+G RFAIREGGKTVG+GV+  II+
Sbjct:  225 SISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRPQFYVRTTDVTGSIKLA-----DGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSGVVSKIIK 399          
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU2_WOLTR4.843e-5959.44Elongation factor Tu 2 OS=Wolbachia sp. subsp. Bru... [more]
EFTU2_NITEC4.843e-5961.11Elongation factor Tu 2 OS=Nitrosomonas eutropha (s... [more]
EFTU1_WOLTR4.843e-5959.44Elongation factor Tu 1 OS=Wolbachia sp. subsp. Bru... [more]
EFTU_SYNFM6.325e-5963.89Elongation factor Tu OS=Syntrophobacter fumaroxida... [more]
EFTU_SHEHH6.325e-5960.89Elongation factor Tu OS=Shewanella halifaxensis (s... [more]
EFTU_ROSDO6.325e-5961.11Elongation factor Tu OS=Roseobacter denitrificans ... [more]
EFTU_RHIRD6.325e-5960.56Elongation factor Tu OS=Rhizobium radiobacter GN=t... [more]
EFTU_DESRM6.325e-5965.19Elongation factor Tu OS=Desulfotomaculum reducens ... [more]
EFTU_CAUCR6.325e-5960.56Elongation factor Tu OS=Caulobacter crescentus GN=... [more]
EFTU_CAMJR6.325e-5960.56Elongation factor Tu OS=Campylobacter jejuni (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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