CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:443..1142. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_BUCAI (Elongation factor Tu OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=tuf PE=3 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 112/179 (62.57%), Postives = 138/179 (77.09%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVE+G IKVGE V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG ++ +I+RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KM V LI P+A   G+RFAIREGG+TVGAGV+  ++
Sbjct:  220 SISGRGTVVTGRVEKGIIKVGEEVEIVGIKKTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEIERGQVLAKPGSIHPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSI-----ELPEGIEMVMPGDNIKMTVTLINPIAMADGLRFAIREGGRTVGAGVVSKVL 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_BUCA5 (Elongation factor Tu OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 112/179 (62.57%), Postives = 138/179 (77.09%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVE+G IKVGE V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG ++ +I+RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD +KM V LI P+A   G+RFAIREGG+TVGAGV+  ++
Sbjct:  220 SISGRGTVVTGRVEKGIIKVGEEVEIVGIKKTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEIERGQVLAKPGSIHPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSI-----ELPEGIEMVMPGDNIKMTVTLINPIAMADGLRFAIREGGRTVGAGVVSKVL 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_PHOPR (Elongation factor Tu 2 OS=Photobacterium profundum GN=tuf2 PE=3 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 109/180 (60.56%), Postives = 139/180 (77.22%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI GRGTV TGRVE+G +++GE V ++G+KET   T TGVEMF+K LDE  AG+NVG+LLRG ++ D++RG VLAKPG+ITPHT F + +YVL K+EGGRH+PFF GYRPQF  RT DVTG +     +  E  +MVMPGD ++M V LI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  220 SIQGRGTVVTGRVEQGIVRIGEEVAIIGIKETTTTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDDVERGQVLAKPGSITPHTTFESEIYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIQMKVTLIAPIAMDEGLRFAIREGGRTVGAGVVAKIFE 394          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_THIDA (Elongation factor Tu OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.079e-58
Identity = 111/180 (61.67%), Postives = 138/180 (76.67%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG IKVGE +++VG+  T   T TGVEMF+K LD+  AGDNVG+LLRG ++ ++QRG VLAKPG+I PHTKF A +YVL K+EGGRH+PFF GYRPQF  RT DVTG +     +    ++MVMPGD V + V LI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  222 SISGRGTVVTGRVERGVIKVGEEIEIVGITPTVKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREEVQRGQVLAKPGSIKPHTKFSAEIYVLSKDEGGRHTPFFNGYRPQFYFRTTDVTGSI-----ELPAGTEMVMPGDNVSIKVSLIQPIAMDEGLRFAIREGGRTVGAGVVAKIEE 396          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SULNB (Elongation factor Tu OS=Sulfurovum sp. (strain NBC37-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.079e-58
Identity = 112/179 (62.57%), Postives = 140/179 (78.21%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            +I GRGTV TG+V+RG + VG+ V++VGLK+T+  TVTGVEMF+K +D  +AGDN G+L+RG+ K  +QRGMVL KPG+ITPHT+F A VYVL KEEGGRH+PFF  YRPQF +RT DVTG V        E ++MVMPGD VK+ VELI P+A ++G RFAIREGG+TVGAGV+  II
Sbjct:  228 TIQGRGTVVTGKVDRGQVCVGDEVEIVGLKDTQKTTVTGVEMFRKEMDCGIAGDNCGVLIRGIDKEAVQRGMVLCKPGSITPHTQFEAEVYVLTKEEGGRHTPFFDNYRPQFYVRTTDVTGSVKL-----QEGTEMVMPGDNVKINVELIAPIALDEGTRFAIREGGRTVGAGVVSKII 401          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_STIAU (Elongation factor Tu OS=Stigmatella aurantiaca GN=tuf PE=3 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.079e-58
Identity = 114/179 (63.69%), Postives = 137/179 (76.54%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI GRGTVATGRVERG IKVGE V++VG++ T+   +TGVEMF+K LDE MAGDN+G LLRG+++ D++RG VLA  G+I PHTKF A VYVL KEEGGRH+PFF GYRPQF  RT DVTG V        +  +MVMPGD + + VELI PVA E+ + FAIREGG+TVGAGV+  II
Sbjct:  222 SIAGRGTVATGRVERGKIKVGEEVEIVGIRPTQKTVITGVEMFRKLLDEGMAGDNIGALLRGLKREDLERGQVLANWGSINPHTKFKAQVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTVKL-----PDNVEMVMPGDNIAIEVELITPVAMEKELPFAIREGGRTVGAGVVADII 395          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_RHIL3 (Elongation factor Tu OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.079e-58
Identity = 108/180 (60.00%), Postives = 139/180 (77.22%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG +KVGE V++VG++ T   TVTGVEMF+K LD+  AGDN+G L+RGV +  ++RG +L KPG++ PH KF+A  Y+L KEEGGRH+PFF  YRPQF  RT DVTG V+       E ++MVMPGD V + VELI+P+A E+ +RFAIREGG+TVGAG++ SI+E
Sbjct:  217 SISGRGTVVTGRVERGIVKVGEEVEIVGIRPTTKTTVTGVEMFRKLLDQGQAGDNIGALIRGVTRDGVERGQILCKPGSVKPHKKFMAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIVTL-----PEGTEMVMPGDNVTVSVELIVPIAMEEKLRFAIREGGRTVGAGIVASIVE 391          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_RALME (Elongation factor Tu OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.079e-58
Identity = 107/180 (59.44%), Postives = 138/180 (76.67%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGR+ERG IKVGE +++VG++ T   T TGVEMF+K LD+  AGDNVGLLLRG ++ D++RG VL KPG+I PHT F   VY+L K+EGGRH+PFF  YRPQF  RT DVTG +     +  ++ +MVMPGD V + V+LI P+A E+G+RFAIREGG+TVGAGV+  I++
Sbjct:  222 SISGRGTVVTGRIERGVIKVGEEIEIVGIRPTVKTTCTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVLCKPGSIKPHTHFTGEVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGSI-----ELPQDKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKILD 396          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PSEF5 (Elongation factor Tu OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.079e-58
Identity = 110/180 (61.11%), Postives = 137/180 (76.11%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG +++ E V++VGL++T+  T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL KPGT+ PHTKF A VYVL KEEGGRH+PFF GYRPQF  RT DVTG       +  E  +MVMPGD ++M V LI  +A E G+RFAIREGG+TVGAGV+  +IE
Sbjct:  223 SISGRGTVVTGRVERGIVRIQEEVEIVGLRDTQKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLVKPGTVKPHTKFTAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIQMTVTLIKTIAMEDGLRFAIREGGRTVGAGVVAKVIE 397          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_BORHD (Elongation factor Tu OS=Borrelia hermsii (strain DAH) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.079e-58
Identity = 114/180 (63.33%), Postives = 138/180 (76.67%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTVATGR+ERG IKVG+ V++VG++ETR  TVTGVEMFQK L++  AGDNVGLLLRGV K D++RG V+A  GTITPH KF A +Y L KEEGGRH PFF+GYRPQF  RT DVTG VS       E  +MVMPGD V +VVELI  +A ++ + FA+REGG+TV +G I  I+E
Sbjct:  221 SISGRGTVATGRIERGIIKVGQEVEIVGIRETRKTTVTGVEMFQKILEQGEAGDNVGLLLRGVDKKDVERGQVIAAIGTITPHKKFKASIYCLTKEEGGRHKPFFSGYRPQFFFRTTDVTGMVSL------EGKEMVMPGDNVDIVVELISLIAMDKNVEFAVREGGRTVASGRILEILE 394          
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BUCAI8.260e-5962.57Elongation factor Tu OS=Buchnera aphidicola subsp.... [more]
EFTU_BUCA58.260e-5962.57Elongation factor Tu OS=Buchnera aphidicola subsp.... [more]
EFTU2_PHOPR8.260e-5960.56Elongation factor Tu 2 OS=Photobacterium profundum... [more]
EFTU_THIDA1.079e-5861.67Elongation factor Tu OS=Thiobacillus denitrificans... [more]
EFTU_SULNB1.079e-5862.57Elongation factor Tu OS=Sulfurovum sp. (strain NBC... [more]
EFTU_STIAU1.079e-5863.69Elongation factor Tu OS=Stigmatella aurantiaca GN=... [more]
EFTU_RHIL31.079e-5860.00Elongation factor Tu OS=Rhizobium leguminosarum bv... [more]
EFTU_RALME1.079e-5859.44Elongation factor Tu OS=Ralstonia metallidurans (s... [more]
EFTU_PSEF51.079e-5861.11Elongation factor Tu OS=Pseudomonas fluorescens (s... [more]
EFTU_BORHD1.079e-5863.33Elongation factor Tu OS=Borrelia hermsii (strain D... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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