CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMF (Elongation factor Tu OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.528e-64
Identity = 120/179 (67.04%), Postives = 144/179 (80.45%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG I VG+ +++VGLKET+  T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL KEEGGRH+PFFA YRPQF  RT DVTG V+      +E  +MVMPG+ V + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  220 SISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVTL-----EEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMB (Elongation factor Tu OS=Neisseria meningitidis serogroup B GN=tufA PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.528e-64
Identity = 120/179 (67.04%), Postives = 144/179 (80.45%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG I VG+ +++VGLKET+  T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL KEEGGRH+PFFA YRPQF  RT DVTG V+      +E  +MVMPG+ V + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  220 SISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVTL-----EEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMA (Elongation factor Tu OS=Neisseria meningitidis serogroup A GN=tufA PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.528e-64
Identity = 120/179 (67.04%), Postives = 144/179 (80.45%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG I VG+ +++VGLKET+  T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL KEEGGRH+PFFA YRPQF  RT DVTG V+      +E  +MVMPG+ V + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  220 SISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVTL-----EEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_THETN (Elongation factor Tu-B OS=Thermoanaerobacter tengcongensis GN=tufB PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.455e-63
Identity = 122/181 (67.40%), Postives = 146/181 (80.66%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG +KVG+ V+++GL  E+R   VTGVEMF+KTLDEA AGDN+G+LLRG+QK +++RG VLAKPGTI PHTKF A VYVL KEEGGRH+PFF GYRPQF  RT DVTG +        E  +MVMPGD V + VELI P+A E+G++FAIREGG+TVGAGV+ +IIE
Sbjct:  225 SITGRGTVATGRVERGKVKVGDEVEIIGLTTESRKTVVTGVEMFRKTLDEAQAGDNIGVLLRGIQKDEVERGQVLAKPGTIKPHTKFEAQVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGTIQL-----PEGVEMVMPGDHVTLRVELITPIAMEEGLKFAIREGGRTVGAGVVSAIIE 400          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CODFR (Elongation factor Tu, chloroplastic OS=Codium fragile GN=tufA PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.900e-63
Identity = 120/181 (66.30%), Postives = 147/181 (81.22%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDE-ESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG I+VG+TV+LVGLK T+   +TG+EMF KTL++++AGDNVG+LLR +QK +IQRGMVLAKP +I PH  F A VY+LKKEEGGRH+ FFAGYRPQF +RT DVTG +       D  + +MVMPGDR++M VELI P+A E  MRFAIREGGKTVGAGV+ +I++
Sbjct:  229 SITGRGTVATGRVERGMIEVGQTVELVGLKNTKEAIITGLEMFHKTLEKSVAGDNVGILLRRIQKEEIQRGMVLAKPSSILPHQHFKAQVYILKKEEGGRHTSFFAGYRPQFYVRTTDVTGHIKTFQGKIDNTQIQMVMPGDRIQMEVELIRPIAIETRMRFAIREGGKTVGAGVVTTIVQ 409          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_NEIG1 (Elongation factor Tu OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.481e-63
Identity = 119/179 (66.48%), Postives = 144/179 (80.45%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVERG I VG+ +++VGLKET+  T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL KEEGGRH+PFFA YRPQF  RT DVTG V+      ++  +MVMPG+ V + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  220 SISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVTL-----EKGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_SORC5 (Elongation factor Tu OS=Sorangium cellulosum (strain So ce56) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.241e-63
Identity = 120/179 (67.04%), Postives = 140/179 (78.21%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI GRGTVATGR+ERG IKVG+ V ++G K+T+   VTGVEMF+K LD+  AGDNVG LLRGV+K +I+RG VLAKPG+ITPHTKF   VYVLKKEEGGRH+PFF  YRPQF +RT DVTG V+       E  KMVMPGD + M +ELI PVA E+ MRFAIREGGKTVGAGV+  I+
Sbjct:  222 SIKGRGTVATGRIERGVIKVGDEVQIIGFKDTKKSVVTGVEMFRKLLDQGQAGDNVGCLLRGVEKEEIERGQVLAKPGSITPHTKFTGEVYVLKKEEGGRHTPFFTNYRPQFYIRTTDVTGTVNL-----PEGVKMVMPGDNITMTIELIAPVALEEQMRFAIREGGKTVGAGVVTKIL 395          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSL (Elongation factor Tu OS=Geobacter sulfurreducens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.241e-63
Identity = 120/180 (66.67%), Postives = 143/180 (79.44%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTVATGRVERG +KVGE V++VG+K T   TVTGVEMF+K LDE  AGDN+G LLRGV++ DI+RG VLAKPG+ITPHTKF A  Y+L KEEGGRH+PFF GYRPQF  RT DVTG V     D    ++MVMPGD V + + LI P+A ++G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  222 SISGRGTVATGRVERGIVKVGEEVEIVGIKATAKTTVTGVEMFRKLLDEGRAGDNIGALLRGVKREDIERGQVLAKPGSITPHTKFKAEAYILTKEEGGRHTPFFNGYRPQFYFRTTDVTGVV-----DLPAGTEMVMPGDNVAVTINLITPIAMDEGLRFAIREGGRTVGAGVVSSIIE 396          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_ALKOO (Elongation factor Tu OS=Alkaliphilus oremlandii (strain OhILAs) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.241e-63
Identity = 124/181 (68.51%), Postives = 144/181 (79.56%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKE-TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG IKV + V+LVGL+E +R   VTGVEMF+K LD+A AGDNVGLLLRG+Q+ +IQRG VL KPGTI PHTKF A VYVLKKEEGGRH+PFF GYRPQF  RT DVTG          +  +MVMPGD V M ++LI P+A E+G+RFAIREGG+TVG+GV+ SIIE
Sbjct:  222 SITGRGTVATGRVERGIIKVQDEVELVGLQEDSRKIVVTGVEMFRKLLDQAQAGDNVGLLLRGIQRTEIQRGQVLCKPGTIKPHTKFKAEVYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGATKL-----PDGMEMVMPGDNVTMEIDLIHPIAIEEGLRFAIREGGRTVGSGVVASIIE 397          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_GEOUR (Elongation factor Tu OS=Geobacter uraniireducens (strain Rf4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.233e-63
Identity = 120/180 (66.67%), Postives = 142/180 (78.89%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTVATGRVERG +KVGE V++VG+K T   TVTGVEMF+K LDE  AGDN+G LLRGV++ DI+RG VLAKPG+ITPHTKF A  Y+L KEEGGRH+PFF GYRPQF  RT DVTG V          ++MVMPGD V + V LI P+A ++G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  222 SISGRGTVATGRVERGIVKVGEEVEIVGMKATAKTTVTGVEMFRKLLDEGRAGDNIGALLRGVKREDIERGQVLAKPGSITPHTKFKAEAYILTKEEGGRHTPFFNGYRPQFYFRTTDVTGIVELAAG-----TEMVMPGDNVAVTVNLITPIAMDEGLRFAIREGGRTVGAGVVSSIIE 396          
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_NEIMF8.528e-6467.04Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_NEIMB8.528e-6467.04Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_NEIMA8.528e-6467.04Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU2_THETN1.455e-6367.40Elongation factor Tu-B OS=Thermoanaerobacter tengc... [more]
EFTU_CODFR1.900e-6366.30Elongation factor Tu, chloroplastic OS=Codium frag... [more]
EFTU_NEIG12.481e-6366.48Elongation factor Tu OS=Neisseria gonorrhoeae (str... [more]
EFTU_SORC53.241e-6367.04Elongation factor Tu OS=Sorangium cellulosum (stra... [more]
EFTU_GEOSL3.241e-6366.67Elongation factor Tu OS=Geobacter sulfurreducens G... [more]
EFTU_ALKOO3.241e-6368.51Elongation factor Tu OS=Alkaliphilus oremlandii (s... [more]
EFTU_GEOUR4.233e-6366.67Elongation factor Tu OS=Geobacter uraniireducens (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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