CB290461

Overview
NameCB290461
Unique NameCB290461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:443..1142. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_MOOTA (Elongation factor Tu OS=Moorella thermoacetica (strain ATCC 39073) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.101e-62
Identity = 119/181 (65.75%), Postives = 145/181 (80.11%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            +ITGRGTV TGRVERG +KVG+ V+++GL+ E R   VTGVEMF+K LDEA+AGDN+G LLRGV + +++RGMVLAKPG+I PHTKF A VYVL KEEGGRH+PFF GYRPQF  RT DVTG V+       E  +MVMPGD ++M +ELI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  225 TITGRGTVTTGRVERGKVKVGDEVEIIGLRDEIRKTVVTGVEMFRKILDEAVAGDNIGTLLRGVDRKEVERGMVLAKPGSIKPHTKFNAEVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGVVNL-----PEGVEMVMPGDNIRMTIELITPIAIEEGLRFAIREGGRTVGAGVVTGIIE 400          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CHACO (Elongation factor Tu, chloroplastic OS=Chara connivens GN=tufA PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.101e-62
Identity = 112/176 (63.64%), Postives = 147/176 (83.52%), Query Frame = -3
Query:  174 SITGRGTVATGRVERGTIKVGETVDLVGLKET-RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVI 698
            SI GRGTVATGR+ERG +K+G+ V+L+GL E  R+  VTG+EMF++ L++  AG+N+G+LLRG++K DI+RGMV+A+PGTI PHT+F A VY+L+KEEGGRHSPFFAGYRPQF +RT DVTG +     D  ++++MVMPGDRVKM+V LI P+A E+ MRFAIREGG+T+GAGV+
Sbjct:  230 SIQGRGTVATGRIERGILKLGDIVELIGLNEKIRSTVVTGLEMFRRLLEQGFAGENIGVLLRGIEKKDIERGMVIAQPGTIEPHTRFEAQVYILRKEEGGRHSPFFAGYRPQFFVRTADVTGVIEAFEYDNGDKTRMVMPGDRVKMIVNLICPIAIEKKMRFAIREGGRTIGAGVV 405          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CAMHC (Elongation factor Tu OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.101e-62
Identity = 119/179 (66.48%), Postives = 142/179 (79.33%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGRVE+G +KVG+TV+LVG+K T+  TVTGVEMF+K LDE  AGDNVG+LLRG  K D++RGMVLAKP +ITPHTKF A VY+L KEEGGRH+PFF  YRPQF +RT DVTG +        E ++MVMPGD VK+ VELI P+A EQG RFAIREGG TVG+GV+  I+
Sbjct:  225 SISGRGTVVTGRVEKGIVKVGDTVELVGIKPTQTTTVTGVEMFRKELDEGEAGDNVGVLLRGTAKEDVERGMVLAKPKSITPHTKFEAEVYILTKEEGGRHTPFFNNYRPQFYVRTTDVTGSIQL-----PEGTEMVMPGDNVKITVELIHPIALEQGTRFAIREGGHTVGSGVVSKIL 398          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_ARCB4 (Elongation factor Tu OS=Arcobacter butzleri (strain RM4018) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.101e-62
Identity = 113/179 (63.13%), Postives = 143/179 (79.89%), Query Frame = -3
Query:  162 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 698
            SI+GRGTV TGR+E+GTIKVGE +++VG  +TR  TVTGVEMF+K +D+  AGDN G+LLRG++K D++RG VL KPGTITPHTKF   VY+L KEEGGRH+PFF+GYRPQF +RT DVTG  +       E ++MVMPGD V+M VEL+ P+A ++G +FAIREGG+TVGAGV+  II
Sbjct:  228 SISGRGTVVTGRIEKGTIKVGEEIEIVGFGDTRKTTVTGVEMFRKEMDQGQAGDNCGILLRGIKKEDVERGQVLVKPGTITPHTKFRCEVYILSKEEGGRHTPFFSGYRPQFYVRTTDVTGSCTL-----PEGTEMVMPGDNVEMTVELVAPIALDKGTKFAIREGGRTVGAGVVAEII 401          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_STAHJ (Elongation factor Tu OS=Staphylococcus haemolyticus (strain JCSC1435) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.743e-62
Identity = 120/180 (66.67%), Postives = 141/180 (78.33%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGRVERG IKVGE V+++G+ +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHTKF A VYVL K+EGGRH+PFF  YRPQF  RT DVTG V+       E ++MVMPGD V+M VELI P+A E G RF+IREGG+TVG+GV+  IIE
Sbjct:  220 SITGRGTVATGRVERGQIKVGEEVEIIGIHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTKFKADVYVLSKDEGGRHTPFFTNYRPQFYFRTTDVTGVVNL-----PEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIE 394          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_PROA2 (Elongation factor Tu OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.743e-62
Identity = 115/180 (63.89%), Postives = 141/180 (78.33%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGR+E G IK+GE V++VG+K TR   VTG+EMFQKTLD+  AGDN G+L RGV K +++RGMV+AKPGTITPHTKF A VY+LKKEEGGRH+PFF  YRPQF  RT DVTG V+       E  +MVMPGD + + VELI+P+A ++ +RFAIREGG+TVGAG +  IIE
Sbjct:  219 SISGRGTVGTGRIESGVIKIGEEVEIVGIKPTRKSVVTGIEMFQKTLDQGQAGDNAGILFRGVDKEELERGMVIAKPGTITPHTKFKAEVYILKKEEGGRHTPFFNNYRPQFYFRTTDVTGAVTL-----PEGVEMVMPGDNLSVEVELIVPIAMDENLRFAIREGGRTVGAGTVTQIIE 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_DICNV (Elongation factor Tu OS=Dichelobacter nodosus (strain VCS1703A) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.743e-62
Identity = 116/180 (64.44%), Postives = 143/180 (79.44%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGRVERG +KVG+ +++VGL++T   T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VLAKPGTITPHTKF + VYVL KEEGGRH+PFF GYRPQF  RT DVTG          E  +MVMPGD VKM+V+LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  222 SISGRGTVVTGRVERGVVKVGDELEIVGLRDTAKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREEVERGQVLAKPGTITPHTKFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGECVL-----PEGVEMVMPGDNVKMIVQLIHPIAMDEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CHLTE (Elongation factor Tu OS=Chlorobium tepidum GN=tuf PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.743e-62
Identity = 118/180 (65.56%), Postives = 141/180 (78.33%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGR+ERG IKVG+ V++VG+K T    VTG+EMFQKTLDE  AGDN GLLLRGV K  ++RGMV+AKPG+ITPHTKF A VY+LKKEEGGRH+PFF GYRPQF  RT DVTG V+       E  +MVMPGD + + VELI P+A E+ +RFAIREGG+TVGAG +  I+E
Sbjct:  219 SISGRGTVGTGRIERGRIKVGDEVEIVGIKPTAKSVVTGIEMFQKTLDEGQAGDNAGLLLRGVDKNALERGMVIAKPGSITPHTKFKAEVYILKKEEGGRHTPFFNGYRPQFYFRTTDVTGSVTL-----PEGVEMVMPGDNLSIDVELIAPIAMEESLRFAIREGGRTVGAGSVTKIVE 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU_CHLL2 (Elongation factor Tu OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.743e-62
Identity = 116/180 (64.44%), Postives = 142/180 (78.89%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SI+GRGTV TGR+ERG IK+ E V++VG+K TR   VTG+EMFQK LDE  AGDN GLLLRGV K +++RGMV+AKPG+I PHTKF A VY+L+KEEGGRH+PFF GYRPQF  RT DVTG V+       E  +MVMPGD + + VELI+P+A ++G+RFAIREGG+TVGAG +  IIE
Sbjct:  219 SISGRGTVGTGRIERGRIKINEEVEIVGIKPTRKSVVTGIEMFQKLLDEGQAGDNAGLLLRGVDKTELERGMVIAKPGSIKPHTKFKAEVYILRKEEGGRHTPFFNGYRPQFYFRTTDVTGSVTL-----PEGVEMVMPGDNLSVEVELIVPIAMDEGLRFAIREGGRTVGAGSVTKIIE 393          
BLAST of CB290461 vs. ExPASy Swiss-Prot
Match: EFTU2_ALKMQ (Elongation factor Tu 2 OS=Alkaliphilus metalliredigens (strain QYMF) GN=tuf2 PE=3 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.743e-62
Identity = 120/181 (66.30%), Postives = 142/181 (78.45%), Query Frame = -3
Query:  159 SITGRGTVATGRVERGTIKVGETVDLVGLKET-RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFSMRTPDVTGRVSFIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 698
            SITGRGTVATGR+ERG +KV E + LVGL E  R   VTGVEMF+K LD+  AGDNVG+LLRG+Q+ +I+RG VLAK G+I PHTKF+A VYVLKKEEGGRH+PFF GYRPQF  RT DVTG +        E  +MVMPGD + M +ELI P+A E+G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  222 SITGRGTVATGRIERGIVKVQEEISLVGLSEAPRKLVVTGVEMFRKLLDQGQAGDNVGILLRGIQRDEIERGQVLAKTGSIQPHTKFMAEVYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIKL-----PEGVEMVMPGDNITMEIELISPIATEEGLRFAIREGGRTVGAGVVASIIE 397          
The following BLAST results are available for this feature:
BLAST of CB290461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MOOTA2.101e-6265.75Elongation factor Tu OS=Moorella thermoacetica (st... [more]
EFTU_CHACO2.101e-6263.64Elongation factor Tu, chloroplastic OS=Chara conni... [more]
EFTU_CAMHC2.101e-6266.48Elongation factor Tu OS=Campylobacter hominis (str... [more]
EFTU_ARCB42.101e-6263.13Elongation factor Tu OS=Arcobacter butzleri (strai... [more]
EFTU_STAHJ2.743e-6266.67Elongation factor Tu OS=Staphylococcus haemolyticu... [more]
EFTU_PROA22.743e-6263.89Elongation factor Tu OS=Prosthecochloris aestuarii... [more]
EFTU_DICNV2.743e-6264.44Elongation factor Tu OS=Dichelobacter nodosus (str... [more]
EFTU_CHLTE2.743e-6265.56Elongation factor Tu OS=Chlorobium tepidum GN=tuf ... [more]
EFTU_CHLL22.743e-6264.44Elongation factor Tu OS=Chlorobium limicola (strai... [more]
EFTU2_ALKMQ2.743e-6266.30Elongation factor Tu 2 OS=Alkaliphilus metalliredi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bf08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bf08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290461 ID=CB290461; Name=CB290461; organism=Citrus sinensis; type=EST; length=700bp
GCACTTGGGAGAGAACTAGTCTCGCGTTTTTTTTTTTTTTTTCTTTTTTT
TCCTAAAATGGGGAAACTAATTCCATAAAAACTTAAGAATATGAAGTTTA
ACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTTCCTAG
GACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTCTTTCC
TCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGGCATAA
TAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGAC
TCCTCGTCCTTGTCGTTCATAATAAAAGACACCCTTCCAGTCACATCAGG
GGTCCTCATGGAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGAGTGCC
TACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACTTAGTA
TGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGAATATC
AGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGCCATTG
CCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGAAATTC
CTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCAACCTTAATAGT
ACCTCTCTCAACACGGCCAGTGGCCACAGTACCACGACCAGTAATTGAAA
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