CB290471

Overview
NameCB290471
Unique NameCB290471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 458
            A KRIL+E+K++Q +P     + P+ E++F WQ  I GP D+ + GG++   I  P +YPFKPP     T   +    +   ICL I     E W P+ ++   L+++ + + T+PN
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 39/117 (33.33%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 458
            A KRIL+E+K++Q +P     + P+ E++F WQ  I GP ++ + GG++   I  P +YPFKPP     T   +    +   ICL I     E W P+ ++   L+++ + + T+PN
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.268e-13
Identity = 39/117 (33.33%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 458
            A KRIL+E+K++Q +P     + P+ E++F WQ  I GP ++ + GG++   I  P +YPFKPP     T   +    +   ICL I     E W P+ ++   L+++ + + T+PN
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 38/117 (32.48%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 458
            A +RIL+E+KE+Q +P     + P  E++F WQ  I GP ++ + GG++   I  P +YPFKPP  +  T   +    +   ICL I     + W P+ ++   L+++ + + T+PN
Sbjct:    2 ATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILK---DQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.691e-13
Identity = 52/192 (27.08%), Postives = 87/192 (45.31%), Query Frame = 3
Query:  126 ILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSI-----SNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIH----EYM---LSKAPPVPQ---LSTCEE 632
            ++ E + +  NPS++F     E NI EW   +RGP DT +EGG++  ++  P EYP+ PP            + P+GR      +C+SI     +      W P+  + T L+++I+ +      +  ++D  K  R+ +  +  E+ P       +K +DE      EY     S  PP+P       CEE
Sbjct:    6 LIAEYRHLIENPSENFKISVNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGR------LCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKKSLDECSPEDIEYFKNAASNVPPIPSDAYEDECEE 191          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12
Identity = 45/176 (25.57%), Postives = 82/176 (46.59%), Query Frame = 3
Query:  126 ILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSI-----SNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIH----EYM---LSKAPPVP 611
            ++ E + +  NPS++F     E N+ EW   ++GP DT +EGG++  +I  P  YP++PP     +   +    +  ++C+SI     +      W P   + T L+++I+ +      +  ++D  K  RR +  +  E+ P       +K +DE      EY     S  PP+P
Sbjct:    6 LMAEYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYRRFVHKEDLESYPMEVKRTVKKSLDECSPEDIEYFKNAASNVPPIP 181          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 39/117 (33.33%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 458
            A KRI +E++++Q +P     + P  +++F+WQ  I GP D+ F GG++   I  P +YPFKPP  +F     +    +   ICL I     E W P+ +V   L+++ + + T+PN
Sbjct:    2 ASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILK---EQWSPALTVSKVLLSICSLL-TDPN 114          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 458
            A KRI +E+ ++  +P     + P+ E++F WQ  I GPGD+ + GG++   I  P +YPFKPP     T    PN    +   ICL I     + W P+ ++   L++ I  M T+PN
Sbjct:    2 AFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPN--INSNGSICLDILR---DQWSPALTISKVLLS-ICSMLTDPN 114          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 3
Query:  120 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHP------------EHWQPSWSVRTALVALIAFMPTNPN 458
            K +L E+K +Q  P + F ++L  E +++ W+ AI GP +T +EGG +  R++ P +YP+ PP+F  LT    PN  +ET   +C+SI   HP            E W P+ +VRT L+++I+ +   PN
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN-IYET-GDVCISIL--HPPVDDPQSGELPSERWNPTQNVRTILLSVISLL-NEPN 135          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 3
Query:  120 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHP------------EHWQPSWSVRTALVALIAFMPTNPN 458
            K +L E+K +Q  P + F ++L  E +++ W+ AI GP +T +EGG +  R++ P +YP+ PP+F  LT    PN  +ET   +C+SI   HP            E W P+ +VRT L+++I+ +   PN
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN-IYET-GDVCISIL--HPPVDDPQSGELPSERWNPTQNVRTILLSVISLL-NEPN 135          
The following BLAST results are available for this feature:
BLAST of CB290471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UBC4_SOLLC7.437e-1434.19Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC8_ARATH9.712e-1433.33Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC10_ARATH1.268e-1333.33Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC29_ARATH2.826e-1332.48Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC_ASFB73.691e-1327.08Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFP41.074e-1225.57Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC30_ARATH1.402e-1233.33Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC1_COLGL1.402e-1234.45Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UB2R1_MOUSE1.402e-1235.38Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN1.402e-1235.38Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bg01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290471 ID=CB290471; Name=CB290471; organism=Citrus sinensis; type=EST; length=781bp
GGACTTTTGTCTGCTCGTTCGCATACAAAGTCCTGATAGGACGGTGGACG
TGAACCGATCGAAATCAGATCTGAAATCCAATGGCGGAAGACAGGTACAA
TTTGAAAAATCCTGCGGTGAAGAGAATCCTACAGGAGGTCAAAGAGATGC
AATCAAATCCGTCAGATGATTTCATGAGCCTCCCTCTCGAGGAGAATATA
TTTGAATGGCAATTTGCGATCAGGGGACCGGGTGATACTGAATTTGAAGG
TGGGATTTATCATGGTCGGATTCAGTTGCCTGCGGAATACCCATTCAAGC
CTCCTTCATTTATGCTCTTAACACCAAATGGGCGTTTTGAAACTCAGACC
AAAATATGCTTAAGCATTTCGAATCATCATCCGGAGCACTGGCAACCATC
TTGGAGTGTGAGGACTGCTCTTGTAGCACTAATTGCTTTCATGCCCACCA
ATCCAAATGGTGCTTTGGGCTCACTAGATTATAAGAAGGAAGAGAGGCGT
GCTCTGGCCATCAAATCTCGTGAAGCTGCCCCAAAATTTGGGACTCCTGA
ACGTCAAAAACTCATTGATGAGATCCATGAATATATGTTAAGCAAGGCAC
CCCCTGTCCCTCAGCTCAGCACCTGTGAAGAACAGCCTGGCAACAGGGAG
GGTGAAGCACAGGCAAGTTCCATAGACGCCATGGTTGCGGGTGCTGGGGA
AGGGCTCCCAGCCCCAGTAGGTGATAGGATTATTGAAGAAGTTCAGGAGG
ATGTTCCTGCCAGCGTGAATCCCAACCCCGT
back to top