CB290471

Overview
NameCB290471
Unique NameCB290471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 36/121 (29.75%), Postives = 64/121 (52.89%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 467
            A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YPFKPP     T   +    +   ICL I       W P+ +V   L+++ + +   NP+  L
Sbjct:    2 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLLCDPNPDDPL 119          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 36/121 (29.75%), Postives = 64/121 (52.89%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 467
            A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YPFKPP     T   +    +   ICL I       W P+ +V   L+++ + +   NP+  L
Sbjct:    2 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLLCDPNPDDPL 119          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 36/121 (29.75%), Postives = 64/121 (52.89%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGAL 467
            A+KRI +E+ ++Q +P     + P+ +++F WQ  I GP D+ ++GG++   +  P +YPFKPP     T   +    +   ICL I       W P+ +V   L+++ + +   NP+  L
Sbjct:    2 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLLCDPNPDDPL 119          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.091e-12
Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 458
            A+KRI +E+ ++  +P     + P+ +++F WQ  I GP D+ + GG++   I  P +YPFKPP     T    PN    +   ICL I     + W P+ ++   L+++ + + T+PN
Sbjct:    2 ALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPN--INSNGSICLDILR---DQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.091e-12
Identity = 44/146 (30.14%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  120 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM-PTNPNGALG---SLDYKKEERRALAIKSREAAPKF 539
            KRI++E++ +  +P    ++ P E+N+  ++  + GP  + +EGG +H  + LP EYP  PP+   LT   +   +   +ICLS      + W P+  +RT L+++ A M   NP+  L    +  +K+ E +A+A  +RE   K+
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLK---KDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIA-NAREWTKKY 146          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 39/113 (34.51%), Postives = 61/113 (53.98%), Query Frame = 3
Query:  123 RILQEVKEMQSNP--SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM 443
            R+ +E KE+Q       D   +  + NIF+W   I+GP +T +EGG++     +P  YP +PP    LT    PN  F+T  +ICL I  +    W P+W++++   A+IA M
Sbjct:    7 RLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKT-GEICLDILKN---AWSPAWTLQSVCRAIIALM 115          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 464
            A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +YP  PP            + P+GR      +C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 136          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 464
            A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +YP  PP            + P+GR      +C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 136          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 464
            A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +YP  PP            + P+GR      +C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 136          
BLAST of CB290471 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  114 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML--------LTPNGRFETQTKICLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 464
            A+KR++ E K++  NP +  ++ P+ EEN FEW+  I GP DT FE G++   +  P +YP  PP            + P+GR      +C+SI  H P           E W P  SV   L+++++ +  P + +GA
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGR------VCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 136          
The following BLAST results are available for this feature:
BLAST of CB290471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UB2D1_MOUSE6.960e-1229.75Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN6.960e-1229.75Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN6.960e-1229.75Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC4_SCHPO9.091e-1231.09Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC13_SCHPO9.091e-1230.14Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC21_ARATH1.187e-1134.51Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UB2G2_PONAB1.187e-1131.65Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE1.187e-1131.65Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN1.187e-1131.65Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN1.187e-1131.65Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290471 ID=CB290471; Name=CB290471; organism=Citrus sinensis; type=EST; length=781bp
GGACTTTTGTCTGCTCGTTCGCATACAAAGTCCTGATAGGACGGTGGACG
TGAACCGATCGAAATCAGATCTGAAATCCAATGGCGGAAGACAGGTACAA
TTTGAAAAATCCTGCGGTGAAGAGAATCCTACAGGAGGTCAAAGAGATGC
AATCAAATCCGTCAGATGATTTCATGAGCCTCCCTCTCGAGGAGAATATA
TTTGAATGGCAATTTGCGATCAGGGGACCGGGTGATACTGAATTTGAAGG
TGGGATTTATCATGGTCGGATTCAGTTGCCTGCGGAATACCCATTCAAGC
CTCCTTCATTTATGCTCTTAACACCAAATGGGCGTTTTGAAACTCAGACC
AAAATATGCTTAAGCATTTCGAATCATCATCCGGAGCACTGGCAACCATC
TTGGAGTGTGAGGACTGCTCTTGTAGCACTAATTGCTTTCATGCCCACCA
ATCCAAATGGTGCTTTGGGCTCACTAGATTATAAGAAGGAAGAGAGGCGT
GCTCTGGCCATCAAATCTCGTGAAGCTGCCCCAAAATTTGGGACTCCTGA
ACGTCAAAAACTCATTGATGAGATCCATGAATATATGTTAAGCAAGGCAC
CCCCTGTCCCTCAGCTCAGCACCTGTGAAGAACAGCCTGGCAACAGGGAG
GGTGAAGCACAGGCAAGTTCCATAGACGCCATGGTTGCGGGTGCTGGGGA
AGGGCTCCCAGCCCCAGTAGGTGATAGGATTATTGAAGAAGTTCAGGAGG
ATGTTCCTGCCAGCGTGAATCCCAACCCCGT
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