CB290473

Overview
NameCB290473
Unique NameCB290473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_PIG (D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.834e-26
Identity = 70/169 (41.42%), Postives = 93/169 (55.03%), Query Frame = 1
Query:  223 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 726
            VLI++ L     ++L +    V    NLS EEL  ++  C+ LI RS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GK L +LG G++G EVA R +  GM  I +DP
Sbjct:    9 VLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTSDVI-NAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDP 176          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.834e-26
Identity = 64/143 (44.76%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  298 NLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 726
            NLS EEL  ++  C+ LI RS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW R K++G  L GKTL +LG G++G EVA R +  GM  + +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDP 176          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.697e-25
Identity = 63/143 (44.06%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  298 NLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 726
            NLS EEL  ++  C+ LI RS TKV  D+  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GK L +LG G++G EVA R +  GM  I +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTSDII-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDP 176          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.201e-24
Identity = 65/171 (38.01%), Postives = 93/171 (54.39%), Query Frame = 1
Query:  217 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 729
            P VLIA+KL Q+ +  L +   V         +L   +   DAL+ RS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +A+ADAS++A  W+R+ + G  + GKT+ V+G G++G  VA R    G HVIA+DPY
Sbjct:    4 PVVLIADKLAQSTVAALGDQVEVRWVDGPDRTKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPY 173          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 63/170 (37.06%), Postives = 94/170 (55.29%), Query Frame = 1
Query:  223 VLIAEKLGQAGLDLLNEFANVDCAY-NLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 729
            VL+++K+   GL  L E   ++    N++  E   ++   DAL+ RS TKV  D+F      LK+VGRAGVG+DN+D+  AT+ G +                        R++ QA+ SVK+ +W R  YVG  L GKTL ++G G++GSE+A+RA+  GM V   DP+
Sbjct:    4 VLVSDKMSNDGLQPLIESDFIEIVQKNVADAE--DELHTFDALLVRSATKVTEDLFNKMTS-LKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPF 170          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.111e-22
Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = 1
Query:  217 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 729
            P VLIA+KL  + +  L +   V        ++L   +   DAL+ RS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS++   W+R+ + G  + GKT+ V+G G++G  VA+R    G +V+A+DPY
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY 173          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.111e-22
Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = 1
Query:  217 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 729
            P VLIA+KL  + +  L +   V        ++L   +   DAL+ RS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS++   W+R+ + G  + GKT+ V+G G++G  VA+R    G +V+A+DPY
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY 173          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19
Identity = 53/177 (29.94%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  214 KPTVLIAEKLGQAGLDLLNEFANVDC---AYNLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRN-------KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 714
            KP VLI  K+ + G+ +L E   V+     + +S E L  K+   DAL+     +++ +VF++ A RLK+V    VG DN+D+  AT+ G                          R + +AD  V++G+W++         ++G  + G+T+ ++GFG++G  +ARRAKG GM ++
Sbjct:    2 KPKVLITRKIPENGIKMLREHFEVEVWEDEHEISREVLLEKVRDVDALVTMLSERIDAEVFDA-APRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRIL 177          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 53/177 (29.94%), Postives = 87/177 (49.15%), Query Frame = 1
Query:  214 KPTVLIAEKLGQAGLDLLNEFANVDC---AYNLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRN-------KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 714
            KP V I   + + G+D+L E   V+       +  E L  K+   DAL+     +++ +VF++ A RL++V    VG DNVD+  AT  G                          R + +AD+  ++G+W+R         ++G  + GKT+ ++GFG++G  VARRAKG GM ++
Sbjct:    2 KPKVFITRAIPENGIDMLREHFEVEVWPEEREIPREVLLEKVRDVDALVTMLSERIDGEVFDN-APRLRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL 177          
BLAST of CB290473 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 52/177 (29.38%), Postives = 88/177 (49.72%), Query Frame = 1
Query:  214 KPTVLIAEKLGQAGLDLLNEFANVDC---AYNLSPEELCTKISLCDALIGRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 714
            KP V I   + + G+++L E   V+       +  E+L  K+   DAL+     +++++VFE+ A RL++V    VG DN+D+  AT  G                          R+V + D  V++G+W+R         ++G  L GKT+ ++GFG++G  +ARRAKG  M ++
Sbjct:    2 KPKVFITRAIPENGINMLEEEFEVEVWEEEREIPREKLLEKVKDVDALVTMLSERIDQEVFEN-APRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIARRAKGFNMRIL 177          
The following BLAST results are available for this feature:
BLAST of CB290473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SERA_PIG5.834e-2641.42D-3-phosphoglycerate dehydrogenase OS=Sus scrofa G... [more]
SERA_MOUSE5.834e-2644.76D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]
SERA_BOVIN1.697e-2544.06D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
SERA_MYCLE3.201e-2438.01D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_BACSU1.589e-2337.06D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_MYCTU5.111e-2235.09D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO5.111e-2235.09D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_THEON6.907e-1929.94Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_THEGJ4.950e-1729.94Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
GYAR_PYRFU4.950e-1729.38Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290473 ID=CB290473; Name=CB290473; organism=Citrus sinensis; type=EST; length=731bp
GCTCCCTCTCCCCATACGACGCCGCTTTAACCACCCCGAAAAATGGCCAC
GTCAGCAGCCTCCTGCGCTGCCTCCCTCCGTCAGCCTTCCCTCAAGCTAT
CACTGTCTTCCAAACACTCTCTTTCCCCTCTATTCTCCGTCTCCTTCAAC
CACAAGCGGGCCCCGCCGCGGCTCGTAATAATCGCATCCGCCGCCGCCGA
CGGCATCTCCTCAAAACCGACCGTTTTGATCGCCGAGAAGCTCGGACAGG
CCGGCTTGGATCTTCTCAACGAGTTCGCCAACGTGGACTGCGCATACAAC
TTGTCGCCAGAGGAGCTCTGCACGAAGATCTCGCTCTGCGACGCGCTGAT
CGGGCGCAGCGGCACGAAGGTCAATCGCGACGTGTTCGAGTCGTCAGCTG
GAAGGTTGAAGGTCGTTGGGAGAGCCGGTGTTGGTATTGATAATGTGGAT
CTGGCTGCGGCTACTGAGTTTGGTTGCTTGGTTGTGAACGCGCCGACGGC
GAATACCGTTGCGGCTGCTGAGCATGGGATCGCGCTTTTGGCTGCCATGG
CTAGAAATGTCGCCCAGGCTGATGCCTCTGTTAAGGCTGGAAAGTGGCAA
AGGAACAAATATGTGGGTGTCTCCCTTGTGGGTAAAACACTTGCTGTATT
GGGATTCGGAAAGGTTGGATCAGAAGTTGCTCGTCGTGCCAAGGGTCTGG
GTATGCATGTCATTGCACATGATCCGTATGC
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