CB290476

Overview
NameCB290476
Unique NameCB290476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290476 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.045e-18
Identity = 57/136 (41.91%), Postives = 71/136 (52.21%), Query Frame = -1
Query:  377 AKMSLIPSIFGNRSVF---------DPFSSDVWAPLGSSSNEVS-TFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAKIDQVKASMENGVL 754
            AK SL+P I    ++          DPF      P G   +E S T + A+VDWKETPE HV   D+PGL         E+ RVL++SGER  E++ K D W RVE           LP+N  +D VKA MENGVL
Sbjct:   26 AKASLLPFIDSPNTLLSDLWSDRFPDPFRVLEQIPYGVEKHEPSITLSHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVL 161          
BLAST of CB290476 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.770e-18
Identity = 51/111 (45.95%), Postives = 61/111 (54.95%), Query Frame = -1
Query:  377 DPFSSDVWAPLGSSSNEVSTFAS-AQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAKIDQVKASMENGVL 706
            DPF      P G   +E S   S A+VDWKETPE HV   D+PGL         E+ RVL++SGER  E+E K D W RVE           LP+N  +D VKA +ENGVL
Sbjct:   43 DPFRVLEHIPFGVDKDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVL 153          
BLAST of CB290476 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.770e-18
Identity = 62/133 (46.62%), Postives = 74/133 (55.64%), Query Frame = -1
Query:  377 MSLIPSIFGNRSVFDPFSSDVWA---PLG---SSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEK--EDKND-KWRRVEXXXXXXXXXXXLPENAKIDQVKASMENGVL 748
            MSL+ S  GN  V DP S D WA   P G   S +       + +VDWKETP AHVF ADLPG+         EDG VL ISGER+ E+  + KND +W  VE           LP  A++DQV ASM+NGVL
Sbjct:    1 MSLVRS--GN--VLDPMSVDFWADADPFGAVRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVL 129          
BLAST of CB290476 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.145e-15
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = -1
Query:  377 DPFSSDVWAPLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAKIDQVKASMENGVL 706
            DPF      PLG   +     + A+VDWKET E H    D+PGL         E+  VL++SGER  E+E K D+W RVE           LP+N  ++ VKA +ENGVL
Sbjct:   48 DPFKILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVL 157          
BLAST of CB290476 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.746e-14
Identity = 46/130 (35.38%), Postives = 68/130 (52.31%), Query Frame = -1
Query:  377 AKMSLIPSIFGNRSVFDPFSSDVWAPLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGER----SVEKEDKNDKWRRVEXXXXXXXXXXXLPENAKIDQVKASMENGVL 754
            A+   +P + G  +  DPF      P G   ++V+  + A+VDW+ET +AH    D+PG+         ED RVL+ISGER    + E++   D W R E           LP+NA +D + AS++NGVL
Sbjct:   38 ARDEAVPEL-GLLAAADPFRILEHVPFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVL 166          
BLAST of CB290476 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.558e-13
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = -1
Query:  377 ASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAKIDQVKASMENGVL 643
            ++A +DWKET  AHVF AD+PG+         E+ +VL+ISG+R+   E+K ++W RVE           LP NA  D V A+++NGVL
Sbjct:   68 STASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVL 156          
BLAST of CB290476 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.461e-12
Identity = 40/74 (54.05%), Postives = 47/74 (63.51%), Query Frame = -1
Query:  314 VLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXKSIQITG 535
            +LQISGER+VEKEDKND W RVE           LP+NAK+DQVKASMENGVL              K+I+I+G
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB290476 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.469e-12
Identity = 42/123 (34.15%), Postives = 69/123 (56.10%), Query Frame = -1
Query:  377 VFDPFSSDVWAPL---GSS-------SNEVSTFASAQVDWKETPEAHVFKADLP-GLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAKIDQVKASMENGVL 712
            +FD  + D W P    G++       +++ S FA+  ++ +ET EA+VF+ADLP G+         ++G VL I+GERSV +E+K  +   +E           LP++A +D V+ASM+ G+L
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGML 128          
The following BLAST results are available for this feature:
BLAST of CB290476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HSP41_PEA1.045e-1841.9122.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP41_SOYBN6.770e-1845.9522.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HS166_ORYSJ6.770e-1846.6216.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH3.145e-1540.9122.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS232_ORYSJ7.746e-1435.3823.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ6.558e-1342.7018.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP12_SOYBN1.461e-1254.05Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ9.469e-1234.1517.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01bg04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290476 ID=CB290476; Name=CB290476; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTACAGATTGTAAGGCTCACCACCATACATCTTCCGTTGA
GAGCTTGCCACAAGCACTATCACAATATTTGGACAACCAAAATATTGGCT
AAGTCCCCGGTTACATGAATTAATAATTAATATATTTCTCCTTCCAAGAA
AACAACATATTTTTATTACTTAAAATTACTTAAAAAAGCAGTCGACAACA
CATTACATGAACAAAAGTATGCGACACACTTAACAGCAATCGCACATCGT
TCATTAACACACAGAACAAAACAAGAACCAAATTAAAAAGGCTGCAATTA
ACGGAGAGTTTCAACCAGTGATCTGAATGGATTTGACCTCAGGCTTCTTC
TCCTCCACTTTGGGAACAGTGACGGTGAGGACACCATTCTCCATTGATGC
CTTAACTTGATCGATCTTGGCATTCTCAGGCAACCGGAACCTCCTCAGGA
ACTTGCCGCGGCCCCTCTCAACACGCCGCCATTTGTCGTTCTTGTCTTCC
TTCTCGACGCTCCTCTCACCGCTGATCTGAAGGACTCTCCCGTCCTCAAC
TTCAACCTTCACTTCCTCTTTCTTGAGCCCCGGAAGATCCGCCTTGAAAA
CATGAGCTTCCGGGGTTTCTTTCCAATCGACTTGAGCACTGGCAAATGTT
GACACCTCATTGCTGGAGGAGCCAAGGGGCGCCCAAACGTCCGAGGAAAA
TGGGTCGAACACGCTCCTGTTTCCGAATATAGATGGAATCAAAGACATTT
TTGCTTAATCAAAGCGACGAGCACTTTCTTCGAAATCGTCCTCGTG
back to top