CB290477

Overview
NameCB290477
Unique NameCB290477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.220e-32
Identity = 78/157 (49.68%), Postives = 94/157 (59.87%), Query Frame = 1
Query:   43 MSLIPSIFGNR--SVFDPFSSDVWAPL----------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 477
            MSLIPSIFG R  +VFDPFS DV+ P            + + +V+ F +A+VDW+ETPEAHVFKADLPGL          DG +LQISGERS E E+KNDKW RVE            PENAK++++KASMENGVL               SI I+G
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 78/153 (50.98%), Postives = 89/153 (58.17%), Query Frame = 1
Query:   43 MSLIPSIFGNR---SVFDPFSSDVWAPL-----GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 477
            MS+IPS F N    ++FDPFS DVW P       S S E S   +A+VDW+ETPEAHVFKADLPGL          +  VL+ISGER VEKEDKND W RVE            PEN K+DQVKA+MENGVL               SIQI+G
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.718e-32
Identity = 74/156 (47.44%), Postives = 92/156 (58.97%), Query Frame = 1
Query:   43 MSLIPSIFGNR--SVFDPFSSDVWAPL---------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 477
            MSL+PS FG R  +VFDPFS DVW P           + + +V+ F +A+VDW+ETPEAHVFKAD+PGL          DG +LQISGERS E E+K+D W RVE            PENAK+++VKASMENGVL               S+ I+G
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.909e-32
Identity = 78/154 (50.65%), Postives = 89/154 (57.79%), Query Frame = 1
Query:   43 MSLIPSIFGN--RSVFDPFSSDVW-------APLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 477
            MSLIPSIFG    +VFDPFS D+W        P  S S E S F + +VDWKET EAHV KAD+PGL          D RVLQISGER+VEKEDKND W RV+            PENAK++QVKA MENGVL                I+I+G
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.349e-31
Identity = 76/157 (48.41%), Postives = 93/157 (59.24%), Query Frame = 1
Query:   43 MSLIPSIFGNR--SVFDPFSSDVWAP-----LGSSS-----NEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 477
            MS+IPS FG R  +VFDPFS DVW P     L +SS      E + F +  +DWKETP+AHVFKADLPGL          +G+VLQISGER+ EKE+KNDKW RVE            PENAK+D+VKA+M NGV+               +I I+G
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.349e-31
Identity = 75/134 (55.97%), Postives = 82/134 (61.19%), Query Frame = 1
Query:   43 MSLIPSIFGNR----SVFDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 414
            MSLIPS FGN     S+FDPFS DVW P        S S E S   +A+VDWKET EAHVFKADLPG+          D  VL+ISGER VEKE+K D W RVE            PEN K+DQVKASMENGVL
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVL 134          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.005e-31
Identity = 75/159 (47.17%), Postives = 93/159 (58.49%), Query Frame = 1
Query:   43 MSLIPSIFGNR--SVFDPFSSDVWAPL---------GSSSN---EVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 477
            MS+IPS FG+R  +V +PFS D+W P          G+SS    E + FA+  +DWKETP+AHVFKADLPGL          +G+VLQISGER+ EKE+KN+KW RVE            PENA +D+VKA MENGVL               SI I+G
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.126e-31
Identity = 71/149 (47.65%), Postives = 87/149 (58.39%), Query Frame = 1
Query:   58 SIFGNRSVFDPFSSDVWAPLGS---------SSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 477
            S+    +VFDPFS D+W P  S         S N+ + FA+A++DWKETPE+HVFKADLPG+          +G VL ISG+RS EKEDKNDKW RVE            PENAK+DQVKA MENGVL               +I+I+G
Sbjct:    2 SLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.695e-31
Identity = 74/132 (56.06%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   43 MSLIPSIFGNR-----SVFDPFSSDVWAP---LGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 414
            MSLIPS FGN      ++FDPFS DVW P   L   S+  S  A+A+VDWKET EAHVFKADLPG+          D  VL+ISGER VEKE+K D W RVE            PEN K+DQVKASMENGVL
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVL 132          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.142e-30
Identity = 70/149 (46.98%), Postives = 87/149 (58.39%), Query Frame = 1
Query:   58 SIFGNRSVFDPFSSDVWAPLGS---------SSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 477
            S+    +VFDPFS D+W P  S         S N+ + FA+A++DWKETPE+HVFKADLPG+          +G VL ISG+RS EKEDKNDKW RVE            PENAK+DQVKA +ENGVL               +I+I+G
Sbjct:    2 SLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
The following BLAST results are available for this feature:
BLAST of CB290477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HS17C_ARATH1.220e-3249.6817.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS17B_ARATH2.081e-3250.9817.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP17_ARATH2.718e-3247.4417.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP15_SOYBN7.909e-3250.6517.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_DAUCA1.349e-3148.4117.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS178_ARATH1.349e-3155.9717.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP12_DAUCA3.005e-3147.1718.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS16B_ORYSJ5.126e-3147.6516.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS17A_ARATH6.695e-3156.0617.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HS16A_ORYSJ1.142e-3046.9816.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290477 ID=CB290477; Name=CB290477; organism=Citrus sinensis; type=EST; length=777bp
GACGATTTCGAAGAAAGTGCTCGTCGCTTTGATTAAGCAAAAATGTCTTT
GATTCCATCTATATTCGGAAACAGGAGCGTGTTCGACCCATTTTCCTCGG
ACGTTTGGGCGCCCCTTGGCTCCTCCAGCAATGAGGTGTCAACATTTGCC
AGTGCTCAAGTCGATTGGAAAGAAACCCCGGAAGCTCATGTTTTCAAGGC
GGATCTTCCGGGGCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTGAGGACG
GGAGAGTCCTTCAGATCAGCGGTGAGAGGAGCGTCGAGAAGGAAGACAAG
AACGACAAATGGCGGCGTGTTGAGAGGGGCCGCGGCAAGTTCCTGAGGAG
GTTCCGGTTGCCTGAGAATGCCAAGATCGATCAAGTTAAGGCATCAATGG
AGAATGGTGTCCTCACCGTCACTGTTCCCAAAGTGGAGGAGAAGAAGCCT
GAGGTCAAATCCATTCAGATCACTGGTTGAAACTCTCCGTTAATTGCAGC
CTTTTTAATTTGGTTCTTGTTTTGTTCTGTGTGTTAATGAACGATGTGCG
ATTGCTGTTAAGTGTGTCGCATACTTTTGTTCATGTAATGTGTTGTCGAC
TGCTTTTTTAAGTAATTTTAAGTAATAAAAATATGTTGTTTTCTTGGAAG
GAGAAATATATTAATTATTAATTCATGTAACCGGGGACTTAGCCAATATT
TTGGTTGTCCAAATATTGTGATAGTGCTTGTGGCAAGCTCTCAACGGAAG
ATGTATGGTGGTGAGCCTTACAATCTG
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