CB290477

Overview
NameCB290477
Unique NameCB290477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.003e-18
Identity = 55/136 (40.44%), Postives = 69/136 (50.74%), Query Frame = 1
Query:   37 AKMSLIPSIFGNRSVF---------DPFSSDVWAPLGSSSNEVS-TFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 414
            AK SL+P I    ++          DPF      P G   +E S T + A+VDWKETPE HV   D+PGL          + RVL++SGER  E++ K D W RVE            P+N  +D VKA MENGVL
Sbjct:   26 AKASLLPFIDSPNTLLSDLWSDRFPDPFRVLEQIPYGVEKHEPSITLSHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVL 161          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.500e-18
Identity = 49/111 (44.14%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   85 DPFSSDVWAPLGSSSNEVSTFAS-AQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 414
            DPF      P G   +E S   S A+VDWKETPE HV   D+PGL          + RVL++SGER  E+E K D W RVE            P+N  +D VKA +ENGVL
Sbjct:   43 DPFRVLEHIPFGVDKDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVL 153          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.500e-18
Identity = 60/133 (45.11%), Postives = 72/133 (54.14%), Query Frame = 1
Query:   43 MSLIPSIFGNRSVFDPFSSDVWA---PLG---SSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEK--EDKND-KWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 414
            MSL+ S  GN  V DP S D WA   P G   S +       + +VDWKETP AHVF ADLPG+          DG VL ISGER+ E+  + KND +W  VE            P  A++DQV ASM+NGVL
Sbjct:    1 MSLVRS--GN--VLDPMSVDFWADADPFGAVRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVL 129          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = 1
Query:   85 DPFSSDVWAPLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 414
            DPF      PLG   +     + A+VDWKET E H    D+PGL          +  VL++SGER  E+E K D+W RVE            P+N  ++ VKA +ENGVL
Sbjct:   48 DPFKILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVL 157          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = 1
Query:   37 AKMSLIPSIFGNRSVFDPFSSDVWAPLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGER----SVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 414
            A+   +P + G  +  DPF      P G   ++V+  + A+VDW+ET +AH    D+PG+          D RVL+ISGER    + E++   D W R E            P+NA +D + AS++NGVL
Sbjct:   38 ARDEAVPEL-GLLAAADPFRILEHVPFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVL 166          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.295e-13
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 1
Query:  148 ASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 414
            ++A +DWKET  AHVF AD+PG+          + +VL+ISG+R+   E+K ++W RVE            P NA  D V A+++NGVL
Sbjct:   68 STASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVL 156          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 38/74 (51.35%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  256 VLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 477
            +LQISGER+VEKEDKND W RVE            P+NAK+DQVKASMENGVL               +I+I+G
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB290477 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.091e-12
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   79 VFDPFSSDVWAPL---GSS-------SNEVSTFASAQVDWKETPEAHVFKADLP-GLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVL 414
            +FD  + D W P    G++       +++ S FA+  ++ +ET EA+VF+ADLP G+          +G VL I+GERSV +E+K  +   +E            P++A +D V+ASM+ G+L
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGML 128          
The following BLAST results are available for this feature:
BLAST of CB290477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HSP41_PEA1.003e-1840.4422.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP41_SOYBN6.500e-1844.1422.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HS166_ORYSJ6.500e-1845.1116.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH3.019e-1539.0922.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS232_ORYSJ7.437e-1433.8523.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ6.295e-1340.4518.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP12_SOYBN1.402e-1251.35Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ9.091e-1233.3317.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290477 ID=CB290477; Name=CB290477; organism=Citrus sinensis; type=EST; length=777bp
GACGATTTCGAAGAAAGTGCTCGTCGCTTTGATTAAGCAAAAATGTCTTT
GATTCCATCTATATTCGGAAACAGGAGCGTGTTCGACCCATTTTCCTCGG
ACGTTTGGGCGCCCCTTGGCTCCTCCAGCAATGAGGTGTCAACATTTGCC
AGTGCTCAAGTCGATTGGAAAGAAACCCCGGAAGCTCATGTTTTCAAGGC
GGATCTTCCGGGGCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTGAGGACG
GGAGAGTCCTTCAGATCAGCGGTGAGAGGAGCGTCGAGAAGGAAGACAAG
AACGACAAATGGCGGCGTGTTGAGAGGGGCCGCGGCAAGTTCCTGAGGAG
GTTCCGGTTGCCTGAGAATGCCAAGATCGATCAAGTTAAGGCATCAATGG
AGAATGGTGTCCTCACCGTCACTGTTCCCAAAGTGGAGGAGAAGAAGCCT
GAGGTCAAATCCATTCAGATCACTGGTTGAAACTCTCCGTTAATTGCAGC
CTTTTTAATTTGGTTCTTGTTTTGTTCTGTGTGTTAATGAACGATGTGCG
ATTGCTGTTAAGTGTGTCGCATACTTTTGTTCATGTAATGTGTTGTCGAC
TGCTTTTTTAAGTAATTTTAAGTAATAAAAATATGTTGTTTTCTTGGAAG
GAGAAATATATTAATTATTAATTCATGTAACCGGGGACTTAGCCAATATT
TTGGTTGTCCAAATATTGTGATAGTGCTTGTGGCAAGCTCTCAACGGAAG
ATGTATGGTGGTGAGCCTTACAATCTG
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