CB290479

Overview
NameCB290479
Unique NameCB290479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290479 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.925e-27
Identity = 78/268 (29.10%), Postives = 128/268 (47.76%), Query Frame = 1 
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 825
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGA 267
[Close]
BLAST of CB290479 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.925e-27
Identity = 78/268 (29.10%), Postives = 128/268 (47.76%), Query Frame = 1 
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 825
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGA 267
[Close]
BLAST of CB290479 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.925e-27
Identity = 78/268 (29.10%), Postives = 128/268 (47.76%), Query Frame = 1 
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 825
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGA 267
[Close]
BLAST of CB290479 vs. ExPASy Swiss-Prot
Match: LLDD_SHIBS (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 4 (strain Sb227) GN=lldD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.925e-27
Identity = 78/268 (29.10%), Postives = 128/268 (47.76%), Query Frame = 1 
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 825
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADTHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGA 267
[Close]
BLAST of CB290479 vs. ExPASy Swiss-Prot
Match: LLDD_SHIB3 (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lldD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.925e-27
Identity = 78/268 (29.10%), Postives = 128/268 (47.76%), Query Frame = 1 
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 825
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGA 267
[Close]
BLAST of CB290479 vs. ExPASy Swiss-Prot
Match: LLDD_ECOUT (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain UTI89 / UPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.925e-27
Identity = 78/268 (29.10%), Postives = 128/268 (47.76%), Query Frame = 1 
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 825
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ + P     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGA 267
[Close]
BLAST of CB290479 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSM (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.925e-27
Identity = 78/268 (29.10%), Postives = 128/268 (47.76%), Query Frame = 1 
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 825
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGA 267
[Close]
BLAST of CB290479 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSE (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SE11) GN=lldD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.925e-27
Identity = 78/268 (29.10%), Postives = 128/268 (47.76%), Query Frame = 1 
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 825
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGA 267
[Close]
BLAST of CB290479 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLU (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.925e-27
Identity = 78/268 (29.10%), Postives = 128/268 (47.76%), Query Frame = 1 
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 825
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGA 267
[Close]
BLAST of CB290479 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLI (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12) GN=lldD PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.925e-27
Identity = 78/268 (29.10%), Postives = 128/268 (47.76%), Query Frame = 1 
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 825
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGA 267
The following BLAST results are available for this feature:
BLAST of CB290479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_SHIFL2.925e-2729.10L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF82.925e-2729.10L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIDS2.925e-2729.10L-lactate dehydrogenase [cytochrome] OS=Shigella d... [more]
LLDD_SHIBS2.925e-2729.10L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_SHIB32.925e-2729.10L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_ECOUT2.925e-2729.10L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOSM2.925e-2729.10L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOSE2.925e-2729.10L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLU2.925e-2729.10L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLI2.925e-2729.10L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290479 ID=CB290479; Name=CB290479; organism=Citrus sinensis; type=EST; length=826bp
GTTTATTGCTTTGCGCTCCCTTCACTGATTCATTTCTGCTTCTTTTGTTG
TTCAAGGAAGCCAAGCGATAGCATTATGACTTATATATCGGAGATCACCA
ATGTTATGGAGTATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGATGGTT
TATGACTACTATGCATCAGGTGCTGAGGACCAGTGGACTCTTCAGGAAAA
CCGTAATGCATTCTCTAGGATTCTATTTCGACCACGCATTCTTAGAGATG
TAAGCAAGATTGACATGACTACAACAGTCTTGGGCTTCAACATTTCCATG
CCCATCATGATTGCTCCAACGGCATTTCAGAAAATGGCTCATCCTGAAGG
GGAGTGTGCAACAGCAAGGGCAGCCTCAGCAGCTGGCACAATCATGACAT
TATCTTCATGGGCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGACCT
GGAATTCGCTTTTTCCAACTCTATGTGACCAAGGACAGGAATGTGGACGC
ACAGCTAGTAAAAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCCTTA
CCGTCGATACTCCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGAACAGA
TTTGTTTTGCCGCCACATCTGACTTTGAAGAACTATGAGGGCTTGTATAT
TGGCAAGATGGATAAGACTGATGACTCTGGATTAGCTTCGTATGTTGCCA
ACCAAATTGACCGGTCACTGAACTGGAAGGATGTGAAGTGGCTTCAAACA
ATCACCTCACTGCCAATACTCGTGAAGGGTGTTCTTACTGCTGAGGATGC
AAGTCTAGCAATACAATATGGAGCTG
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