CB290483

Overview
NameCB290483
Unique NameCB290483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:52..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290483 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.278e-46
Identity = 94/164 (57.32%), Postives = 120/164 (73.17%), Query Frame = 3
Query:  261 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTNWALVS 731
            D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++ IIE SV+PGGG+WL GQLFSAMV+RKPAH+FL EL I Y+++  YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +         V GVVTNW LV+
Sbjct:   34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVT 197          
BLAST of CB290483 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20
Identity = 53/147 (36.05%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  288 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV 728
            ++E  ++R +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV+  A   LDE GI Y+E +    +  A    +TI SK++ +  VK+FN +  EDL++K  RV G+V NW  V
Sbjct:    2 LREVTITRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMIEVEDLVIKDNRVSGIVINWTPV 146          
BLAST of CB290483 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 54/147 (36.73%), Postives = 82/147 (55.78%), Query Frame = 3
Query:  288 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV 728
            +K+ ++SR +   Y  D++   + D    GAG +G+   Y L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN V  EDL+VK  RV G+V NW  V
Sbjct:    2 LKDVVISRAIVESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMVEVEDLVVKDDRVSGIVINWTPV 146          
BLAST of CB290483 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 54/147 (36.73%), Postives = 82/147 (55.78%), Query Frame = 3
Query:  288 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV 728
            ++E  +SR +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN +  EDL+VK  RV G+V NW  V
Sbjct:    2 LREVTISRAIIESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMIEVEDLVVKDNRVSGIVINWTPV 146          
BLAST of CB290483 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = 3
Query:  288 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV 728
            ++E  +SR +   Y  D++     D    GAG +G+   Y L+K    ++AI E+ +S GGG W     F+ +VV++ A   LDE G+DY +  + + +  +    ST+ SK + +   K+FN V  EDL+VK GRV G+V NW  V
Sbjct:    1 MREIEISRAIVEAYFNDLLQNLQLDIAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSVGGGIWGGAMGFNRVVVQESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMVEVEDLVVKDGRVSGLVINWTPV 145          
BLAST of CB290483 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.049e-19
Identity = 49/144 (34.03%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  288 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW 719
            +++ ++SR +  RY   +    + D    GAG +GL+ AYEL+KN   ++A+ E+  +PGGG W  G +F+ +V+ K    FL E+ I+Y+ ++ ++V+  +  F S ++ +   +    +FN V+ ED+ V+ GRV GVV NW
Sbjct:    3 MRDVLISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKEDHIVV-DSVHFASGLLYR-ATKAGAIVFNNVSVEDVAVQNGRVCGVVVNW 143          
BLAST of CB290483 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 48/151 (31.79%), Postives = 84/151 (55.63%), Query Frame = 3
Query:  276 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV 728
            K D IK   +SR +   YM D++ Y + D    G G +GL+  Y L++   +++A+ E+ +S GGG W  G +F+ +VV+      LDE GI  +  D    +  +   TST+ S+   +  +K+FN ++ ED++++   + G+V NW+ V
Sbjct:    2 KLDDIK---ISRAIVEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSR-ACQAGLKIFNLMSIEDVMIRDEGITGLVLNWSSV 147          
BLAST of CB290483 vs. ExPASy Swiss-Prot
Match: THI4_METMJ (Putative thiazole biosynthetic enzyme OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_2251 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  288 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDE-QDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALV 728
            + E  +SR +       +I + + D    G G +GL+CA  L +   ++ A+IE+ +S GGG W  G +F  +VV++ A   LD  GI Y   ++ Y V K         ++       V+ FN    ED++++G GR+GG+V NW  V
Sbjct:    3 LNEVTISRAILEEQHRALIDHLEMDAAVIGGGPSGLACAALLGEK-GVKCALIEKKLSIGGGMWGGGMMFPRIVVQEDARRLLDRFGIAYKAFEEGYYVAKSVEAVAK--LTAAACDAGVEFFNLTTVEDVMIRGDGRIGGLVVNWTPV 148          
BLAST of CB290483 vs. ExPASy Swiss-Prot
Match: THI4_METAC (Putative thiazole biosynthetic enzyme OS=Methanosarcina acetivorans GN=MA_2851 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 48/152 (31.58%), Postives = 80/152 (52.63%), Query Frame = 3
Query:  288 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLA---RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS 731
            + E I++R +   Y    + Y D D    G G A L  A  L++   +++A+ EQ +S GGG W  G +F  +VV++ A   LD+ GI Y E +S   + ++       + KL+A       ++FN V+ ED++++   RV G+V NW  V+
Sbjct:    3 LDEVIITRAIFDEYSKTFLDYTDIDVALVGGGPANLVAAKYLAE-AGVKVALYEQKLSLGGGMWAGGMMFPRIVVQEEATRILDDFGIRYKEYESGYYVANSV----ESVGKLIAGATSAGAEVFNLVSFEDIMIRENDRVTGIVINWGPVT 149          
BLAST of CB290483 vs. ExPASy Swiss-Prot
Match: THI4_FERNB (Putative thiazole biosynthetic enzyme OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=Fnod_1422 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/144 (29.86%), Postives = 74/144 (51.39%), Query Frame = 3
Query:  288 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW 719
            +K+  +S+ + + Y   +    + D    G G + L+ A EL+KN   ++AI E    PGGG W  G +F+ +V+      +L E  I Y ++D ++V+   A+  ++ M     +    +FN V  EDL++   R+ GVV NW
Sbjct:    3 MKDLKISQLIVKHYFQKLNDVLNVDVAIAGCGPSALALATELAKNGR-KVAIFEAKNEPGGGIWGGGMMFNELVLESELEWYLKEHHIKYKKEDEFIVVD--AVHFASAMLYNATKNGAYIFNNVFVEDLVMYNERISGVVINW 143          
The following BLAST results are available for this feature:
BLAST of CB290483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
THI4_YEAST2.278e-4657.32Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRHO2.147e-2036.05Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU4.783e-2036.73Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB6.247e-2036.73Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO1.392e-1935.37Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_THEMA4.049e-1934.03Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_METTH3.790e-1731.79Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_METMJ1.348e-1431.54Putative thiazole biosynthetic enzyme OS=Methanocu... [more]
THI4_METAC5.122e-1431.58Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_FERNB1.141e-1329.86Putative thiazole biosynthetic enzyme OS=Fervidoba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290483 ID=CB290483; Name=CB290483; organism=Citrus sinensis; type=EST; length=733bp
GCACCAGGATCACTGCTGCAAATCAAATTACTTCTCATTATCAACCTTCT
AAGCAGCAGGGGAAGGAGGGGTAAAAAAAAAAAAACATGGCAGCCATGGC
TTCTACAGCTTTCGCTCCTTCAGTTTCGTCTACCACCAATAAGCTCTTTG
ACTCATCCTTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAA
CCCATCAAATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTC
TCCTCCTTATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCA
TTGTTTCTCGTGAAATGACGCGCAGGTACATGACGGACATGATCACTTAT
GCTGACACTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTG
TGCTTATGAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAAC
AGTCTGTTAGCCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTCTCT
GCCATGGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCAT
CGACTACGATGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGCTGT
TCACCTCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTC
TTTAATGCAGTGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAGTTGG
TGGTGTGGTGACCAACTGGGCGTTGGTGTCAAT
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