CB290489

Overview
NameCB290489
Unique NameCB290489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_USTMA (Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 PE=3 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.512e-78
Identity = 138/239 (57.74%), Postives = 180/239 (75.31%), Query Frame = 1
Query:   85 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFS---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            DQLTI  LGAG EVGRSC  + YRGKTI+ D G+HPA++G+AALP+ DE+D S +D +LITHFHLDHAA+L Y +EKT F    G+V+MTH TKA+Y+ L++D+V++S    +D LFDE ++  S  +IE +DFHQ V +  G++F  Y AGHVLGA MF+++IAG+R+LYTGD+SREEDRHL  AE+P   PD+ I ESTYG Q H+PR  +E RFT  IH  I +GGRVL+P + LG
Sbjct:   22 DQLTIEMLGAGQEVGRSCCVLKYRGKTIVCDTGVHPAFTGIAALPFIDELDWSTVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDENEMLASWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREEDRHLVQAEIPPVKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRGGRVLLPVFVLG 260          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_DEBHA (Endoribonuclease YSH1 OS=Debaryomyces hansenii GN=YSH1 PE=3 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 1.730e-74
Identity = 128/251 (51.00%), Postives = 177/251 (70.52%), Query Frame = 1
Query:   85 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV----------------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            D      LG  NEVGRSC  + Y+ K I+ D G+HP   G+++LP++DE D S +D+LL++HFHLDHAASLPY ++ T F+GRVFMTHATKAIY+ LL+D+VKV+ +                +    L+ + D+ RS DRIE +D+H T+E++GI+F  Y AGHVLGA M+ ++I G++VL+TGDYS EEDRHL+ AE+P   PDI I EST+G   H+PR  +E R T++IHST+ +GGR+L+P +ALG
Sbjct:   12 DDFKFFGLGGCNEVGRSCHIIEYKNKVIMLDAGVHPGLQGLSSLPFYDEYDLSKVDILLVSHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVKVTSIGGGSDARLNNSDPNANTGSSNLYTDDDLMRSFDRIETIDYHSTIELDGIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDYSSEEDRHLQVAEVPPIKPDILITESTFGTATHEPRLEKETRMTNIIHSTLLKGGRILMPVFALG 262          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_CANAL (Endoribonuclease YSH1 OS=Candida albicans GN=YSH1 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.049e-71
Identity = 129/238 (54.20%), Postives = 175/238 (73.53%), Query Frame = 1
Query:  106 LGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VED-------MLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            LG  NEVGRSC  + Y+ K I+ D G+HPA SG A+ PYFDE D S +D+LLI+HFH+DH+ASLPY ++++ F G+VFMTHATKAIY+ L+ D+V+V+ +     ED        L+ + DI +S DRIE +D+H T+E++GI+F  Y AGHVLGA M+ ++I G++VL+TGDYSREE+RHL AAE+P   PDI I EST+G    +PR   ER+ T  IH+TI++GGRVL+P +ALG
Sbjct:  105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDISKVDILLISHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSNLYTDDDIMKSFDRIETIDYHSTMEIDGIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDYSREENRHLHAAEVPPLKPDILISESTFGTGTLEPRIELERKLTTHIHATIAKGGRVLLPVFALG 342          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_NEUCR (Endoribonuclease ysh-1 OS=Neurospora crassa GN=ysh-1 PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.732e-69
Identity = 127/239 (53.14%), Postives = 172/239 (71.97%), Query Frame = 1
Query:   85 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            D+L  + LG GNEVGRSC  + Y+GKT++ D G HPAY G+AALP+FD+ D S +DVLLI+HFH+DHAASLPY L KT F GRVFMTHATKAIYK L+ D V+V   S      +++ E+D  ++   IE +D++ T  ++ I+   Y AGHVLGAAMF+++IAG+++ +TGDYSREEDRHL +A++P+    D+ I ESTYG+  H PR  RE+     I   +++GGRVL+P +ALG
Sbjct:   22 DELMFLNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTEEDHLKTFPMIEAIDYNTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREEDRHLISAKVPKGVKIDVLITESTYGIASHIPRPEREQALMKSITGILNRGGRVLMPVFALG 260          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_ASPFU (Endoribonuclease ysh1 OS=Aspergillus fumigatus GN=ysh1 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.734e-66
Identity = 128/248 (51.61%), Postives = 169/248 (68.15%), Query Frame = 1
Query:   61 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            D PV    D+L    LG GNEVGRSC  + Y+GKT++ D G+HPA  G +ALP+FDE D S +D+LLI+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+VS  +        L+ E D   ++  IE +DF+ T  VN I+   + AGHVLGAAMF++ IAG+ +L+TGDYSREEDRHL  AE+P+    D+ I EST+G+  + PR  RE      I   +++GGRVL+P +ALG
Sbjct:   16 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSDQRTTLYTEHDHLSTLPLIETIDFNTTHTVNSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKSITGILNRGGRVLMPVFALG 262          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_EMENI (Endoribonuclease ysh1 OS=Emericella nidulans GN=ysh1 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.124e-65
Identity = 126/248 (50.81%), Postives = 168/248 (67.74%), Query Frame = 1
Query:   61 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            D PV    D+L    LG GNEVGRSC  + Y+GKT++ D G+HPA  G +ALP+FDE D S +D+LLI+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+V+  +        L+ E D   ++  IE +DF+ T  +N I+   Y AGHVLGAAMF++ IAG+ +L+TGDYSREEDRHL  A +P+    D+ I EST+G+  + PR  RE      I   +++GGRVL+P +ALG
Sbjct:   15 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVNNTASSSDQRTTLYTEHDHLSTLPLIETIDFNTTHTINSIRITPYPAGHVLGAAMFLISIAGLNILFTGDYSREEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNRGGRVLMPVFALG 261          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_CRYNE (Endoribonuclease YSH1 OS=Cryptococcus neoformans GN=YSH1 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.270e-65
Identity = 121/247 (48.99%), Postives = 170/247 (68.83%), Query Frame = 1
Query:   67 PVSREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--LFDEQDINRSMDRIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            P   +   LTI  LGAG EVGRSC  + +RGK I+ D G+HPA  G+ ALP+ DE+D S +D +LITHFH+DHAA+LPY +EKT F   +G+V+MTHATKAIY L + D V+++  + +    L+DE D+  S      +D+HQ + +  G++F  Y AGHVLGA+MF+++IAG+++LYTGDYSREEDRHL  AE+P   PD+ I EST+GV     R  +E +FT ++ + + +GGR L+P  + G
Sbjct:   21 PPDEDAPSLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALPFIDELDWSTVDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNPDTSGRLYDEADVQSSWQSTIAVDYHQDIVIAGGLRFTPYHAGHVLGASMFLIEIAGLKILYTGDYSREEDRHLVMAEIPPVKPDVMICESTFGVHTLPDRKEKEEQFTTLVANIVRRGGRCLMPIPSFG 267          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: YSH1_GIBZE (Endoribonuclease YSH1 OS=Gibberella zeae GN=YSH1 PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.119e-64
Identity = 128/270 (47.41%), Postives = 170/270 (62.96%), Query Frame = 1
Query:   85 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH-------------------------------FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            D+L  + LG GNEVGRSC  + Y+GKT++ D G HPAY G+AALP++D+ D S +DVLLI+H                               FH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V   S       ++ EQD   +  +IE +D+H T  ++ I+   Y AGHVLGAAMF+++IAG+ + +TGDYSRE+DRHL +AE+P+    D+ I ESTYG+  H PR  RE+     I S +++GGRVL+P +ALG
Sbjct:   23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHPVQDTTALYCHGQYCACVMSISMIMLLIGHSFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALG 292          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_CHICK (Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.687e-51
Identity = 102/241 (42.32%), Postives = 145/241 (60.17%), Query Frame = 1
Query:   88 QLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            ++ + PLGAG +VGRSC+ +S  GK ++ DCG+H  Y+     P F  I  +      +D ++I+HFHLDH  +LPYF E   + G ++MTH TKAI  +LL DY K++     E   F  Q I   M ++  +  HQTV+V+  ++   Y AGHVLGAAMF + +    V+YTGDY+   DRHL AA + +  PD+ I ESTY   +   +  RER F   +H T+ +GG+VLIP +ALG
Sbjct:    3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 243          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_RAT (Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.986e-51
Identity = 101/241 (41.91%), Postives = 145/241 (60.17%), Query Frame = 1
Query:   88 QLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            ++ + PLGAG +VGRSC+ +S  GK ++ DCG+H  Y+     P F  I  S      +D ++I+HFHLDH  +LPYF E   + G ++MTH T+AI  +LL DY K++     E   F  Q I   M ++  +  HQTV+V+  ++   Y AGHVLGAAMF + +    V+YTGDY+   DRHL AA + +  P++ I ESTY   +   +  RER F   +H T+ +GG+VLIP +ALG
Sbjct:    3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 243          
The following BLAST results are available for this feature:
BLAST of CB290489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
YSH1_USTMA1.512e-7857.74Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 P... [more]
YSH1_DEBHA1.730e-7451.00Endoribonuclease YSH1 OS=Debaryomyces hansenii GN=... [more]
YSH1_CANAL1.049e-7154.20Endoribonuclease YSH1 OS=Candida albicans GN=YSH1 ... [more]
YSH1_NEUCR3.732e-6953.14Endoribonuclease ysh-1 OS=Neurospora crassa GN=ysh... [more]
YSH1_ASPFU1.734e-6651.61Endoribonuclease ysh1 OS=Aspergillus fumigatus GN=... [more]
YSH1_EMENI1.124e-6550.81Endoribonuclease ysh1 OS=Emericella nidulans GN=ys... [more]
YSH1_CRYNE4.270e-6548.99Endoribonuclease YSH1 OS=Cryptococcus neoformans G... [more]
YSH1_GIBZE2.119e-6447.41Endoribonuclease YSH1 OS=Gibberella zeae GN=YSH1 P... [more]
INT11_CHICK2.687e-5142.32Integrator complex subunit 11 OS=Gallus gallus GN=... [more]
INT11_RAT5.986e-5141.91Integrator complex subunit 11 OS=Rattus norvegicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290489 ID=CB290489; Name=CB290489; organism=Citrus sinensis; type=EST; length=790bp
GCCCTTGGTTCACTTGAAAGCATGGCTTCAACGGGGCAACCGCCGTCACT
AAAAAGACGGGACGTGCCGGTATCAAGAGAAGGTGACCAACTTACAATAA
TCCCACTAGGAGCTGGCAATGAAGTGGGAAGATCCTGTGTGTACATGTCC
TATAGAGGGAAAACTATTTTGTTTGACTGTGGAATTCATCCCGCTTACTC
GGGTATGGCTGCATTGCCTTACTTCGATGAGATTGATCCTTCAGCAATTG
ATGTCCTTCTTATCACACACTTTCATTTGGATCATGCTGCATCCCTACCT
TATTTTCTGGAGAAGACTACATTCAGTGGCAGGGTATTTATGACTCATGC
TACAAAGGCTATTTACAAGTTGCTTTTGACTGATTATGTAAAAGTGAGCA
AAGTTTCAGTTGAAGATATGTTGTTCGATGAACAAGACATTAATCGCTCC
ATGGATAGAATTGAGGTTCTTGATTTCCATCAGACAGTGGAAGTGAATGG
CATTAAATTCTGGTGTTATACCGCTGGCCATGTCCTGGGTGCTGCCATGT
TTATGGTTGACATTGCTGGTGTTCGAGTACTCTACACTGGAGATTATTCT
CGTGAAGAAGACCGACATCTCCGTGCTGCTGAGCTTCCTCAGTTCTCTCC
TGACATTTGTATAATCGAATCCACTTATGGTGTTCAGCTTCATCAACCAC
GGAACATTCGTGAGAGGCGCTTCACTGATGTTATTCACTCAACTATTTCT
CAAGGAGGTCGTGTTCTAATTCCGGCATATGCCCTTGGCC
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