CB290489
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_MOUSE (Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 5.986e-51 Identity = 101/241 (41.91%), Postives = 145/241 (60.17%), Query Frame = 1 Query: 88 QLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 ++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D ++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I M ++ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY + + RER F +H T+ +GG+VLIP +ALG Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 243
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_PONAB (Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 3.880e-50 Identity = 99/241 (41.08%), Postives = 145/241 (60.17%), Query Frame = 1 Query: 88 QLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 ++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I M ++ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY + + RER F +H T+ +GG+VLIP +ALG Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 243
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_HUMAN (Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 3.880e-50 Identity = 99/241 (41.08%), Postives = 145/241 (60.17%), Query Frame = 1 Query: 88 QLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 ++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I M ++ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY + + RER F +H T+ +GG+VLIP +ALG Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 243
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_DANRE (Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.474e-49 Identity = 101/240 (42.08%), Postives = 143/240 (59.58%), Query Frame = 1 Query: 91 LTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 + + PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I + +D ++I+HFHLDH +LPY E + G ++MTH TKAI +LL D+ K++ E F Q I M ++ L+ HQTV+V+ ++ Y AGHVLGAAM + + V+YTGDY+ DRHL AA + + PDI I ESTY + + RER F +H T+ +GG+VLIP +ALG Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 243
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_BOVIN (Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2) HSP 1 Score: 194.126 bits (492), Expect = 7.318e-49 Identity = 99/241 (41.08%), Postives = 142/241 (58.92%), Query Frame = 1 Query: 88 QLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 ++ + PLGAG +VGRSC+ +S GK ++ DCG+H +S P F S +D ++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F Q I M ++ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P + I ESTY + + RER F +H T+ +GG+VLIP +ALG Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 243
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_DICDI (Integrator complex subunit 11 homolog OS=Dictyostelium discoideum GN=ints11 PE=3 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 3.632e-48 Identity = 100/240 (41.67%), Postives = 142/240 (59.17%), Query Frame = 1 Query: 91 LTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 + ++PLGAG +VGRSCV ++ K I+FDCG+H + P F I + ID ++ITHFHLDH +LP+F E + G ++MT TKAI +LL DY K++ + E F Q I M ++ ++ HQT++V+ + Y AGHVLGAAMF + V+YTGDY+ DRHL +A + Q PD+ I E+TY + + RER F IH + +GG+VLIP +ALG Sbjct: 3 IKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDCVIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFFTAQMIKDCMKKVIPVNLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNMTPDRHLGSAWIDQVKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIPVFALG 242
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: Y162_METJA (Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii GN=MJ0162 PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.615e-30 Identity = 73/230 (31.74%), Postives = 127/230 (55.22%), Query Frame = 1 Query: 109 GAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 G ++G SCV + + +L DCG+ P +P ++D A+D ++++H HLDH ++P++ K +++ TH T + + D + ++K + E+DI +M+ IE L++++ ++ IKF Y AGH+LG+A +++ G ++LYTGD + R L A+ D+ IIESTYG + + R ER+ + I TI GG+V+IP +A+G Sbjct: 8 GGCQQIGMSCVEVETQKGRVLLDCGMSP---DTGEIP---KVDDKAVDAVIVSHAHLDHCGAIPFYKFK-----KIYCTHPTADLMFITWRDTLNLTKA------YKEEDIQHAMENIECLNYYEERQITENIKFKFYNAGHILGSASIYLEVDGKKILYTGDINEGVSRTLLPADTDIDEIDVLIIESTYGSPLDIKPARKTLERQLIEEISETIENGGKVIIPVFAIG 220
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: Y1236_METJA (Uncharacterized protein MJ1236 OS=Methanocaldococcus jannaschii GN=MJ1236 PE=4 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 7.873e-27 Identity = 79/235 (33.62%), Postives = 121/235 (51.49%), Query Frame = 1 Query: 106 LGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGV--QLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789 LG EVGRSC+Y+ +L DCGI+ A A P+FD E +D +++TH HLDH +P L + + G V+ T T+ + LL DY++++K +++ + +DI + +D+ T +++ IK + AGHVLG+A+ + I + YTGD E R L A + IIESTYG + R ER V+ T +GG+VLIP + +G Sbjct: 185 LGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIEDLDAVIVTHAHLDHCGFIP-GLFRYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTSKDIKTCVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKFETSRLLEPAVCQFPRLETLIIESTYGAYDDVLPEREEAERELLRVVSETTDRGGKVLIPVFGVG 417
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: RNSE_THET8 (Ribonuclease TTHA0252 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0252 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.028e-26 Identity = 70/232 (30.17%), Postives = 119/232 (51.29%), Query Frame = 1 Query: 91 LTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYAL 786 + I+P GA EV S + G+ +L DCG+ F DP +D +L+TH HLDH LP L + + G V+ T AT + +++L D +KV +++ F +D+ ++ + L++ + + + + AGH+ G+A + G ++Y+GD E L LP + D+ + E TYG + H+P R F +++ T+SQGG+VLIP +A+ Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAHLDHVGRLPK-LFREGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAV 225
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: Y047_METJA (Uncharacterized protein MJ0047 OS=Methanocaldococcus jannaschii GN=MJ0047 PE=3 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23 Identity = 70/235 (29.79%), Postives = 115/235 (48.94%), Query Frame = 1 Query: 91 LTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREEDRHLRAAELPQFSPDI--CIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYAL 786 + II GA EVGRSC+ + IL DCG+ P D +D + I+H HLDH+ +LP + V T +K + K+LL D VK+++ + + ++ D+ ++ L+++ + ++AGH+ G+A +++ + +LYTGD + R + A+L DI IIESTYG +H R E F + I + +GG LIP +A+ Sbjct: 1 MEIIFRGAALEVGRSCIEIKTDKSKILLDCGVKLGKE--IEYPILDN-SIRDVDKVFISHAHLDHSGALPVLFHRK-MDVPVITTELSKKLIKVLLKDMVKIAETENKKIPYNNHDVKEAIRHTIPLNYNDKKYYKDFSYELFSAGHIPGSASILLNYQNNKTILYTGDVKLRDTRLTKGADLSYTKDDIDILIIESTYGNSIHPDRKAVELSFIEKIKEILFRGGVALIPVFAV 231 The following BLAST results are available for this feature:
BLAST of CB290489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290489 ID=CB290489; Name=CB290489; organism=Citrus sinensis; type=EST; length=790bpback to top |