CB290489

Overview
NameCB290489
Unique NameCB290489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_MOUSE (Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.986e-51
Identity = 101/241 (41.91%), Postives = 145/241 (60.17%), Query Frame = 1
Query:   88 QLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            ++ + PLGAG +VGRSC+ +S  GK ++ DCG+H  Y+     P F  I  S      +D ++I+HFHLDH  +LPYF E   + G ++MTH T+AI  +LL DY K++     E   F  Q I   M ++  +  HQTV+V+  ++   Y AGHVLGAAMF + +    V+YTGDY+   DRHL AA + +  P++ I ESTY   +   +  RER F   +H T+ +GG+VLIP +ALG
Sbjct:    3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 243          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_PONAB (Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.880e-50
Identity = 99/241 (41.08%), Postives = 145/241 (60.17%), Query Frame = 1
Query:   88 QLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            ++ + PLGAG +VGRSC+ +S  GK ++ DCG+H  ++     P F  I  +      +D ++I+HFHLDH  +LPYF E   + G ++MTH T+AI  +LL DY K++     E   F  Q I   M ++  +  HQTV+V+  ++   Y AGHVLGAAMF + +    V+YTGDY+   DRHL AA + +  P++ I ESTY   +   +  RER F   +H T+ +GG+VLIP +ALG
Sbjct:    3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 243          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_HUMAN (Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.880e-50
Identity = 99/241 (41.08%), Postives = 145/241 (60.17%), Query Frame = 1
Query:   88 QLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            ++ + PLGAG +VGRSC+ +S  GK ++ DCG+H  ++     P F  I  +      +D ++I+HFHLDH  +LPYF E   + G ++MTH T+AI  +LL DY K++     E   F  Q I   M ++  +  HQTV+V+  ++   Y AGHVLGAAMF + +    V+YTGDY+   DRHL AA + +  P++ I ESTY   +   +  RER F   +H T+ +GG+VLIP +ALG
Sbjct:    3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 243          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_DANRE (Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.474e-49
Identity = 101/240 (42.08%), Postives = 143/240 (59.58%), Query Frame = 1
Query:   91 LTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            + + PLGAG +VGRSC+ +S  GK I+ DCG+H  ++     P F  I  +      +D ++I+HFHLDH  +LPY  E   + G ++MTH TKAI  +LL D+ K++     E   F  Q I   M ++  L+ HQTV+V+  ++   Y AGHVLGAAM  + +    V+YTGDY+   DRHL AA + +  PDI I ESTY   +   +  RER F   +H T+ +GG+VLIP +ALG
Sbjct:    4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 243          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_BOVIN (Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 7.318e-49
Identity = 99/241 (41.08%), Postives = 142/241 (58.92%), Query Frame = 1
Query:   88 QLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            ++ + PLGAG +VGRSC+ +S  GK ++ DCG+H  +S     P F     S      +D ++I+HFHLDH  +LPYF E   + G ++MT  T+AI  +LL DY K++     E   F  Q I   M ++  +  HQTV+V+  ++   Y AGHVLGAAMF + +    V+YTGDY+   DRHL AA + +  P + I ESTY   +   +  RER F   +H T+ +GG+VLIP +ALG
Sbjct:    3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 243          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: INT11_DICDI (Integrator complex subunit 11 homolog OS=Dictyostelium discoideum GN=ints11 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.632e-48
Identity = 100/240 (41.67%), Postives = 142/240 (59.17%), Query Frame = 1
Query:   91 LTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            + ++PLGAG +VGRSCV ++   K I+FDCG+H   +     P F  I  +      ID ++ITHFHLDH  +LP+F E   + G ++MT  TKAI  +LL DY K++ +   E   F  Q I   M ++  ++ HQT++V+  +    Y AGHVLGAAMF   +    V+YTGDY+   DRHL +A + Q  PD+ I E+TY   +   +  RER F   IH  + +GG+VLIP +ALG
Sbjct:    3 IKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDCVIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFFTAQMIKDCMKKVIPVNLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNMTPDRHLGSAWIDQVKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIPVFALG 242          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: Y162_METJA (Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii GN=MJ0162 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.615e-30
Identity = 73/230 (31.74%), Postives = 127/230 (55.22%), Query Frame = 1
Query:  109 GAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            G   ++G SCV +  +   +L DCG+ P       +P   ++D  A+D ++++H HLDH  ++P++  K     +++ TH T  +  +   D + ++K       + E+DI  +M+ IE L++++  ++   IKF  Y AGH+LG+A   +++ G ++LYTGD +    R L  A+      D+ IIESTYG  + +   R   ER+  + I  TI  GG+V+IP +A+G
Sbjct:    8 GGCQQIGMSCVEVETQKGRVLLDCGMSP---DTGEIP---KVDDKAVDAVIVSHAHLDHCGAIPFYKFK-----KIYCTHPTADLMFITWRDTLNLTKA------YKEEDIQHAMENIECLNYYEERQITENIKFKFYNAGHILGSASIYLEVDGKKILYTGDINEGVSRTLLPADTDIDEIDVLIIESTYGSPLDIKPARKTLERQLIEEISETIENGGKVIIPVFAIG 220          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: Y1236_METJA (Uncharacterized protein MJ1236 OS=Methanocaldococcus jannaschii GN=MJ1236 PE=4 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.873e-27
Identity = 79/235 (33.62%), Postives = 121/235 (51.49%), Query Frame = 1
Query:  106 LGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGV--QLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALG 789
            LG   EVGRSC+Y+      +L DCGI+ A     A P+FD  E     +D +++TH HLDH   +P  L +  + G V+ T  T+ +  LL  DY++++K   +++ +  +DI   +     +D+  T +++  IK   + AGHVLG+A+  + I      + YTGD   E  R L  A       +  IIESTYG    +   R   ER    V+  T  +GG+VLIP + +G
Sbjct:  185 LGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIEDLDAVIVTHAHLDHCGFIP-GLFRYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTSKDIKTCVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKFETSRLLEPAVCQFPRLETLIIESTYGAYDDVLPEREEAERELLRVVSETTDRGGKVLIPVFGVG 417          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: RNSE_THET8 (Ribonuclease TTHA0252 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0252 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.028e-26
Identity = 70/232 (30.17%), Postives = 119/232 (51.29%), Query Frame = 1
Query:   91 LTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYAL 786
            + I+P GA  EV  S   +   G+ +L DCG+            F   DP  +D +L+TH HLDH   LP  L +  + G V+ T AT  + +++L D +KV    +++  F  +D+  ++  +  L++ + + +  +      AGH+ G+A  +    G  ++Y+GD    E   L    LP  + D+ + E TYG + H+P     R F +++  T+SQGG+VLIP +A+
Sbjct:    1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAHLDHVGRLPK-LFREGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAV 225          
BLAST of CB290489 vs. ExPASy Swiss-Prot
Match: Y047_METJA (Uncharacterized protein MJ0047 OS=Methanocaldococcus jannaschii GN=MJ0047 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.897e-23
Identity = 70/235 (29.79%), Postives = 115/235 (48.94%), Query Frame = 1
Query:   91 LTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREEDRHLRAAELPQFSPDI--CIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYAL 786
            + II  GA  EVGRSC+ +      IL DCG+          P  D      +D + I+H HLDH+ +LP    +      V  T  +K + K+LL D VK+++   + + ++  D+  ++     L+++         +  ++AGH+ G+A  +++    + +LYTGD    + R  + A+L     DI   IIESTYG  +H  R   E  F + I   + +GG  LIP +A+
Sbjct:    1 MEIIFRGAALEVGRSCIEIKTDKSKILLDCGVKLGKE--IEYPILDN-SIRDVDKVFISHAHLDHSGALPVLFHRK-MDVPVITTELSKKLIKVLLKDMVKIAETENKKIPYNNHDVKEAIRHTIPLNYNDKKYYKDFSYELFSAGHIPGSASILLNYQNNKTILYTGDVKLRDTRLTKGADLSYTKDDIDILIIESTYGNSIHPDRKAVELSFIEKIKEILFRGGVALIPVFAV 231          
The following BLAST results are available for this feature:
BLAST of CB290489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
INT11_MOUSE5.986e-5141.91Integrator complex subunit 11 OS=Mus musculus GN=C... [more]
INT11_PONAB3.880e-5041.08Integrator complex subunit 11 OS=Pongo abelii GN=C... [more]
INT11_HUMAN3.880e-5041.08Integrator complex subunit 11 OS=Homo sapiens GN=C... [more]
INT11_DANRE1.474e-4942.08Integrator complex subunit 11 OS=Danio rerio GN=cp... [more]
INT11_BOVIN7.318e-4941.08Integrator complex subunit 11 OS=Bos taurus GN=CPS... [more]
INT11_DICDI3.632e-4841.67Integrator complex subunit 11 homolog OS=Dictyoste... [more]
Y162_METJA2.615e-3031.74Uncharacterized protein MJ0162 OS=Methanocaldococc... [more]
Y1236_METJA7.873e-2733.62Uncharacterized protein MJ1236 OS=Methanocaldococc... [more]
RNSE_THET81.028e-2630.17Ribonuclease TTHA0252 OS=Thermus thermophilus (str... [more]
Y047_METJA6.897e-2329.79Uncharacterized protein MJ0047 OS=Methanocaldococc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290489 ID=CB290489; Name=CB290489; organism=Citrus sinensis; type=EST; length=790bp
GCCCTTGGTTCACTTGAAAGCATGGCTTCAACGGGGCAACCGCCGTCACT
AAAAAGACGGGACGTGCCGGTATCAAGAGAAGGTGACCAACTTACAATAA
TCCCACTAGGAGCTGGCAATGAAGTGGGAAGATCCTGTGTGTACATGTCC
TATAGAGGGAAAACTATTTTGTTTGACTGTGGAATTCATCCCGCTTACTC
GGGTATGGCTGCATTGCCTTACTTCGATGAGATTGATCCTTCAGCAATTG
ATGTCCTTCTTATCACACACTTTCATTTGGATCATGCTGCATCCCTACCT
TATTTTCTGGAGAAGACTACATTCAGTGGCAGGGTATTTATGACTCATGC
TACAAAGGCTATTTACAAGTTGCTTTTGACTGATTATGTAAAAGTGAGCA
AAGTTTCAGTTGAAGATATGTTGTTCGATGAACAAGACATTAATCGCTCC
ATGGATAGAATTGAGGTTCTTGATTTCCATCAGACAGTGGAAGTGAATGG
CATTAAATTCTGGTGTTATACCGCTGGCCATGTCCTGGGTGCTGCCATGT
TTATGGTTGACATTGCTGGTGTTCGAGTACTCTACACTGGAGATTATTCT
CGTGAAGAAGACCGACATCTCCGTGCTGCTGAGCTTCCTCAGTTCTCTCC
TGACATTTGTATAATCGAATCCACTTATGGTGTTCAGCTTCATCAACCAC
GGAACATTCGTGAGAGGCGCTTCACTGATGTTATTCACTCAACTATTTCT
CAAGGAGGTCGTGTTCTAATTCCGGCATATGCCCTTGGCC
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