CB290493

Overview
NameCB290493
Unique NameCB290493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.461e-30
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = 1
Query:  322 PPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            PPPFL+KTY ++ED AT++V+SW   G  FVVW P +F+RDLLP  FKH+NFSSF+RQLNTYGFRK+   RWEF N+ F +G   LL  I RRK
Sbjct:   18 PPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRK 111          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.904e-30
Identity = 72/162 (44.44%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  298 LEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMK 783
            LE   +S PPPFL KTY L+ED  T++V+SW+     F+VW P  F+  LLP  FKH+NFSSFVRQLNTYGFRKV   RWEF N+ F +G+K LL  IRRRK   N            +S D             E ++LR + + L  E   L  +  S K
Sbjct:   51 LEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTK 212          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.930e-29
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 1
Query:  298 LEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            +E   ++ PPPFL KTY ++EDPATD V+SW+     FVVW   +F+  LLP  FKHSNFSSF+RQLNTYGFRK+   RWEF N+ F  G+K LL  I+RR+
Sbjct:   34 MEGLNETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRR 135          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFA6A_ARATH (Heat stress transcription factor A-6a OS=Arabidopsis thaliana GN=HSFA6A PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.827e-29
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 1
Query:  298 LEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            LE  +++ P  FL KTY ++ED +T+N++SW+ D   F+VW+P  FA   LP  FKH+NFSSFVRQLNTYGF+K+ T RWEF N+ F KGE+ LL  I+RRK
Sbjct:    9 LEGLKETPPTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRK 110          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFA2A_ORYSJ (Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.827e-29
Identity = 61/102 (59.80%), Postives = 73/102 (71.57%), Query Frame = 1
Query:  298 LEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            +E   ++ PPPFL KTY +++DP TD VISW   G  FVVW    FA  LLP  FKHSNFSSFVRQLNTYGFRKV   RWEF N+ F +G+K+LL  I+RR+
Sbjct:   43 MEGLGEAGPPPFLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKELLKTIKRRR 144          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.998e-29
Identity = 71/157 (45.22%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  322 PPPFLLKTYMLIEDPATDNVISWN-GDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRK 789
            P PFLLKTY +++DP+TD V+SW+      FVVW   EFA  LLP  FKHSNFSSF+RQLNTYGFRK+   RWEF N+ F KG+K LL  I RRK                 SH              E     DE +RL +E  NL ++L   K++
Sbjct:   19 PAPFLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRK--------------PIHSHSH----PPGALPDNERAIFEDEIERLSREKSNLQADLWKSKQQ 157          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFA7A_ARATH (Heat stress transcription factor A-7a OS=Arabidopsis thaliana GN=HSFA7A PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.525e-29
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  298 LEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRR 600
            +E   ++ PPPFL KT+ +++DP TD+++SWN  GT FVVW    F+  LLP  FKHSNFSSF+RQLNTYGFRK+   RWEF N+ F  G++ LL  I+RR
Sbjct:   19 MEGLHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHSNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRR 119          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 1
Query:  325 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKA 606
            PPFL KT+ L++DP  D VISW   G  FVVW P EFAR +LP  FKH+NFSSFVRQLNTYGFRK+ T +WEF N+ F +G+K LL  I RR++
Sbjct:   54 PPFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRS 147          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.899e-28
Identity = 64/152 (42.11%), Postives = 90/152 (59.21%), Query Frame = 1
Query:  298 LEYARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDE----DQRXXXXXXXXXEYNTLRDENKRLK 741
            +E  +++ P PFL KT+ ++ DP T++++SWN  G  FVVW P  F+  +LP  FKH+NFSSFVRQLNTYGFRK+   RWEF N+ F  G++DLL  I+RR + ++            E+HD      Q          E +TLR E +R +
Sbjct:   18 MEGLQEAGPSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTS-SSSPPSLNYSQSQPEAHDPGVELPQLREERHVLMMEISTLRQEEQRAR 168          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.899e-28
Identity = 57/94 (60.64%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  322 PPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            PPPFL KTY +++DP TD V+SW+     FVVW P  F   LLP  FKH+NFSSFVRQLNTYGFRKV   +WEF N+ F +G+K LL  I+RRK
Sbjct:   36 PPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRK 129          
The following BLAST results are available for this feature:
BLAST of CB290493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HFA4D_ORYSJ3.461e-3061.70Heat stress transcription factor A-4d OS=Oryza sat... [more]
HFA6B_ARATH5.904e-3044.44Heat stress transcription factor A-6b OS=Arabidops... [more]
HSFA2_ARATH2.930e-2956.86Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HFA6A_ARATH3.827e-2955.88Heat stress transcription factor A-6a OS=Arabidops... [more]
HFA2A_ORYSJ3.827e-2959.80Heat stress transcription factor A-2a OS=Oryza sat... [more]
HSFA5_ORYSJ4.998e-2945.22Heat stress transcription factor A-5 OS=Oryza sati... [more]
HFA7A_ARATH8.525e-2955.45Heat stress transcription factor A-7a OS=Arabidops... [more]
HSFA3_ARATH1.113e-2861.70Heat stress transcription factor A-3 OS=Arabidopsi... [more]
HFA7B_ARATH1.899e-2842.11Heat stress transcription factor A-7b OS=Arabidops... [more]
HFA2E_ORYSJ1.899e-2860.64Heat stress transcription factor A-2e OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290493 ID=CB290493; Name=CB290493; organism=Citrus sinensis; type=EST; length=796bp
GCACGTGGGAAGTCTTTAGCAATTAAATAGCATTGCAATTGAATTCTCAT
GAATTGCCCTCGTGGAGTCGTATTGGGTTTCTATTGTTGGGGCTGGGAGT
TCTTAACTGCAATTCTCATCTTCTCCAATATCCTTCTTCATCTTTAGATT
AATCTTCTTCTCTTTTAGCTAATTTCCCTCTTCAATATTTCCCTTCTTTT
TTTTTTTTTGGTCTTTTTAATTGTTTGCGATATTTGAAATATGGAGGCTA
CAAATAATATTACAATAAGCAGCTGCTGTGATGACAATAAGGGCCTACTG
GAATATGCCAGAAAATCAACACCCCCACCATTTCTGTTGAAGACTTACAT
GCTAATAGAGGATCCGGCCACCGATAACGTCATCTCGTGGAACGGCGACG
GCACCGGCTTCGTTGTCTGGCAGCCGGCCGAGTTTGCCCGGGATCTACTG
CCGACACTCTTCAAGCACAGCAACTTCTCTAGCTTTGTTCGCCAGCTCAA
TACTTACGGATTTCGAAAAGTAGCAACAAGCAGGTGGGAATTTTGCAACC
AAATGTTTAGAAAGGGGGAGAAAGATCTTTTATGCAAGATACGTCGAAGA
AAAGCATGGGCAAACAGGCAGCAAGCAGCAACGGCAGCAGCAACACAACA
AGAATCTCATGATGAAGATCAAAGGTCGTCGTCGTCGACGTCATCGTTGT
CGGAGTACAACACCCTAAGGGATGAGAATAAGCGTTTGAAGAAGGAGAAT
GGGAACTTAAGTTCGGAGCTTGTAAGCATGAAAAGGAAGTGCAAGG
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