CB290493

Overview
NameCB290493
Unique NameCB290493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290493_ssr675 microsatellite CB290493_ssr675:675..686. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2836 contig Csv1_Contig2836:44..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 69/148 (46.62%), Postives = 81/148 (54.73%), Query Frame = 1
Query:  325 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSE 768
            PPFL KTY L+ +P  D VISW   G  FVVW P+ FARD+LP  FKH+NFSSFVRQLNTYGFRKV   RWEF ++ F +  K LL KI RR++   +              D             E NTLR E   L +E   L  E
Sbjct:   66 PPFLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADRWEFAHEDFLRHSKHLLKKIVRRRSSPTQQSGLQPGSSGESGLD------------PELNTLRREKSALLQEVTRLKQE 201          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFA6B_ORYSJ (Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.778e-26
Identity = 57/104 (54.81%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  298 LEYARKSTPPPFLLKTYMLIEDPATDNVISWN--GDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            +E   ++ P PF+ KTY ++ D ATD V+SW   G G  FVVW P   A  +LP  FKH+NFSSFVRQLNTYGFRKV   RWEF N+ F  G+K LL  I+RR+
Sbjct:   83 MEGLGEAGPAPFVAKTYEMVADAATDAVVSWGPGGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDRWEFANEAFLAGQKHLLKNIKRRR 186          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFC2A_ORYSJ (Heat stress transcription factor C-2a OS=Oryza sativa subsp. japonica GN=HSFC2A PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.718e-25
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  328 PFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKA 606
            PF+ KTY +++DPATD VI+W  D   FVV  P  F++ LLP  FKHSNFSSFVRQLNTYGFRKV   RWEF +  F +G+  LL +I RR +
Sbjct:   14 PFVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDRWEFAHVSFLRGQTHLLRRIVRRSS 106          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFC1_ARATH (Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.468e-25
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  328 PFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            PF++KTY ++ DP+TD +I+W      F+V  P +F++ +LP  FKH+NFSSFVRQLNTYGFRKV   RWEF N+ F +G+K LL  I RRK
Sbjct:   17 PFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRK 108          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFA9_ORYSJ (Heat stress transcription factor A-9 OS=Oryza sativa subsp. japonica GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.468e-25
Identity = 69/164 (42.07%), Postives = 87/164 (53.05%), Query Frame = 1
Query:  310 RKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXE------YNTLRDENKRLKKENGNLSSELVSMK 783
            + S   PFL K Y ++ DPATDNVISW   G  FV+W    F RDL    FKHSNF+SF+RQLNTYGFRKV   RWE+ N+ F  G+K LL  I+RRK  +             ES  E Q+         E      Y  L  E + LK++   L  +LV ++
Sbjct:   44 KPSEVAPFLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAFERDL-HRHFKHSNFTSFIRQLNTYGFRKVHPDRWEWANEGFIMGQKHLLKTIKRRKKSSQ------------ESPSEIQKAPVKTAPGTENIEIGKYGGLEKEVETLKRDKALLMQQLVDLR 194          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFA9_ARATH (Heat stress transcription factor A-9 OS=Arabidopsis thaliana GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.838e-24
Identity = 59/157 (37.58%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  328 PFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK---AWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRK 789
            PFL KT+ +++D  TD V+SW+     F++W   EF+ +LLP  FKH NFSSF+RQLN+YGF+KV + RWEF N+ F+ G+K LL  I+RR       N+           ES  E+Q            + +R E  +LK++      ++V+++ K
Sbjct:   71 PFLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRRSKNTKCCNKEASTTTTETEVESLKEEQ------------SPMRLEMLKLKQQQEESQHQMVTVQEK 215          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFC1A_ORYSJ (Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica GN=HSFC1A PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 52/92 (56.52%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  328 PFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            PF+ KTY ++ DP TD ++ W  D   FVV  PA F++ LLP  FKH NFSSFVRQLNTYGFRKV   RWEF ++ F +G+  LL +I RRK
Sbjct:   26 PFVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDRWEFAHESFLRGQTHLLPRIVRRK 117          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFC2B_ORYSJ (Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.098e-23
Identity = 52/91 (57.14%), Postives = 61/91 (67.03%), Query Frame = 1
Query:  328 PFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRR 600
            PF+ KTY ++EDP TD VI W      FVV  P  F++ LLP  FKH+NFSSFVRQLNTYGFRKV   RWEF +  F +G+  LL  I RR
Sbjct:   11 PFVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHASFLRGQTHLLRNIVRR 101          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.098e-23
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  328 PFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            PF+ KT+ ++ DP+T+ V+ W G G  F+V  PA F+  LLP+ FKH NF+SFVRQLNTYGFRKV   RWEF ++ F +G+  LL +I R+K
Sbjct:   24 PFVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKK 115          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSFA8_ARATH (Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.728e-22
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  316 STPPPFLLKTYMLIEDPATDNVISWNGDG-TGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNQMFRKGEKDLLCKIRRRK 603
            S+  PFL K Y +++D  TD++ISW+      FV+     F+  LLP  FKHSNFSSF+RQLN YGFRKV   RWEF N  F +G+KDLL  + RRK
Sbjct:   15 SSVAPFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRK 111          
The following BLAST results are available for this feature:
BLAST of CB290493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSFA3_ORYSJ3.582e-2746.62Heat stress transcription factor A-3 OS=Oryza sati... [more]
HFA6B_ORYSJ1.778e-2654.81Heat stress transcription factor A-6a OS=Oryza sat... [more]
HFC2A_ORYSJ5.718e-2558.06Heat stress transcription factor C-2a OS=Oryza sat... [more]
HSFC1_ARATH7.468e-2555.43Heat stress transcription factor C-1 OS=Arabidopsi... [more]
HSFA9_ORYSJ7.468e-2542.07Heat stress transcription factor A-9 OS=Oryza sati... [more]
HSFA9_ARATH2.838e-2437.58Heat stress transcription factor A-9 OS=Arabidopsi... [more]
HFC1A_ORYSJ6.322e-2456.52Heat stress transcription factor C-1a OS=Oryza sat... [more]
HFC2B_ORYSJ4.098e-2357.14Heat stress transcription factor C-2b OS=Oryza sat... [more]
HFC1B_ORYSJ4.098e-2353.26Heat stress transcription factor C-1b OS=Oryza sat... [more]
HSFA8_ARATH7.728e-2252.58Heat stress transcription factor A-8 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290493 ID=CB290493; Name=CB290493; organism=Citrus sinensis; type=EST; length=796bp
GCACGTGGGAAGTCTTTAGCAATTAAATAGCATTGCAATTGAATTCTCAT
GAATTGCCCTCGTGGAGTCGTATTGGGTTTCTATTGTTGGGGCTGGGAGT
TCTTAACTGCAATTCTCATCTTCTCCAATATCCTTCTTCATCTTTAGATT
AATCTTCTTCTCTTTTAGCTAATTTCCCTCTTCAATATTTCCCTTCTTTT
TTTTTTTTTGGTCTTTTTAATTGTTTGCGATATTTGAAATATGGAGGCTA
CAAATAATATTACAATAAGCAGCTGCTGTGATGACAATAAGGGCCTACTG
GAATATGCCAGAAAATCAACACCCCCACCATTTCTGTTGAAGACTTACAT
GCTAATAGAGGATCCGGCCACCGATAACGTCATCTCGTGGAACGGCGACG
GCACCGGCTTCGTTGTCTGGCAGCCGGCCGAGTTTGCCCGGGATCTACTG
CCGACACTCTTCAAGCACAGCAACTTCTCTAGCTTTGTTCGCCAGCTCAA
TACTTACGGATTTCGAAAAGTAGCAACAAGCAGGTGGGAATTTTGCAACC
AAATGTTTAGAAAGGGGGAGAAAGATCTTTTATGCAAGATACGTCGAAGA
AAAGCATGGGCAAACAGGCAGCAAGCAGCAACGGCAGCAGCAACACAACA
AGAATCTCATGATGAAGATCAAAGGTCGTCGTCGTCGACGTCATCGTTGT
CGGAGTACAACACCCTAAGGGATGAGAATAAGCGTTTGAAGAAGGAGAAT
GGGAACTTAAGTTCGGAGCTTGTAAGCATGAAAAGGAAGTGCAAGG
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