CB290493

Overview
NameCB290493
Unique NameCB290493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF4_MOUSE (Heat shock factor protein 4 OS=Mus musculus GN=Hsf4 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.732e-17
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  316 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVAT-----------SRWEFCNQMFRKGEKDLLCKIRRR 600
            S  P FL K + L+ DP TD++I W+  GT F+V   + FA+++LP  FKHSN +SFVRQLN YGFRKV +              EF +  F +G + LL ++RR+
Sbjct:   15 SPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK 120          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF4_HUMAN (Heat shock factor protein 4 OS=Homo sapiens GN=HSF4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.732e-17
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  316 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVAT-----------SRWEFCNQMFRKGEKDLLCKIRRR 600
            S  P FL K + L+ DP TD++I W+  GT F+V   + FA+++LP  FKHSN +SFVRQLN YGFRKV +              EF +  F +G + LL ++RR+
Sbjct:   16 SPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK 121          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF4_CANFA (Heat shock factor protein 4 OS=Canis familiaris GN=HSF4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.732e-17
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  316 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVAT-----------SRWEFCNQMFRKGEKDLLCKIRRR 600
            S  P FL K + L+ DP TD++I W+  GT F+V   + FA+++LP  FKHSN +SFVRQLN YGFRKV +              EF +  F +G + LL ++RR+
Sbjct:   15 SPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK 120          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF_YEAST (Heat shock factor protein OS=Saccharomyces cerevisiae GN=HSF1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.486e-17
Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = 1
Query:  304 YARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKV-----------ATSRWEFCNQMFRKGEKDLLCKIRRRKAWAN 615
            Y    + P F+ K + ++ D +   +I W  DG  F+V    EF   +LP  FKHSNF+SFVRQLN YG+ KV           +  +W+F N+ F +G +DLL KI R+K  +N
Sbjct:  166 YQSHKSRPAFVNKLWSMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSIQSSSDDKWQFENENFIRGREDLLEKIIRQKGSSN 280          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF3_CHICK (Heat shock factor protein 3 OS=Gallus gallus GN=HSF3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.277e-16
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  325 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA-----------TSRWEFCNQMFRKGEKDLLCKIRRR 600
            P FL K + L+EDP +D+VI W+ +G  F +     FA++LLP  FKH+N SSF+RQLN YGFRKV             S  EF +  F++G   LL  I+R+
Sbjct:   17 PGFLAKLWALVEDPQSDDVICWSRNGENFCILDEQRFAKELLPKYFKHNNISSFIRQLNMYGFRKVVALENGMITAEKNSVIEFQHPFFKQGNAHLLENIKRK 119          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF_XENLA (Heat shock factor protein OS=Xenopus laevis GN=hsf1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.668e-16
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  316 STPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA-----------TSRWEFCNQMFRKGEKDLLCKIRRR 600
            S  P FL K + L+EDP TD +I W+ +G  F V+   +FA+++LP  FKH+N +SFVRQLN YGFRKV                EF +  F +G++ LL  I+R+
Sbjct:   10 SNVPAFLAKLWTLVEDPDTDPLICWSPEGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPYFIRGQEQLLENIKRK 115          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF1_MOUSE (Heat shock factor protein 1 OS=Mus musculus GN=Hsf1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.337e-16
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  307 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA-----------TSRWEFCNQMFRKGEKDLLCKIRRR 600
            A  S  P FL K + L+ DP TD +I W+  G  F V+   +FA+++LP  FKH+N +SFVRQLN YGFRKV                EF +  F +G++ LL  I+R+
Sbjct:   10 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 118          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF1_HUMAN (Heat shock factor protein 1 OS=Homo sapiens GN=HSF1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.337e-16
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  307 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA-----------TSRWEFCNQMFRKGEKDLLCKIRRR 600
            A  S  P FL K + L+ DP TD +I W+  G  F V+   +FA+++LP  FKH+N +SFVRQLN YGFRKV                EF +  F +G++ LL  I+R+
Sbjct:   10 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 118          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF1_BOVIN (Heat shock factor protein 1 OS=Bos taurus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.337e-16
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  307 ARKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA-----------TSRWEFCNQMFRKGEKDLLCKIRRR 600
            A  S  P FL K + L+ DP TD +I W+  G  F V    +FA+++LP  FKHSN +SFVRQLN YGFRKV                EF +  F +G++ LL  I+R+
Sbjct:   10 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVLDQGQFAKEVLPKYFKHSNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 118          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF2_MOUSE (Heat shock factor protein 2 OS=Mus musculus GN=Hsf2 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.408e-15
Identity = 52/171 (30.41%), Postives = 81/171 (47.37%), Query Frame = 1
Query:  310 RKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA-----------TSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRK 789
            + S  P FL K + L+E+  T+  I+W+ +G  F+V     FA+++LP  FKH+N +SFVRQLN YGFRKV                EF +  F++G+ DLL  I+R+ + +                D  +          +  T+      LK EN +L  E+  ++ K
Sbjct:    3 QSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIESGIIKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSK------PEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAK 167          
The following BLAST results are available for this feature:
BLAST of CB290493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSF4_MOUSE5.732e-1743.40Heat shock factor protein 4 OS=Mus musculus GN=Hsf... [more]
HSF4_HUMAN5.732e-1743.40Heat shock factor protein 4 OS=Homo sapiens GN=HSF... [more]
HSF4_CANFA5.732e-1743.40Heat shock factor protein 4 OS=Canis familiaris GN... [more]
HSF_YEAST7.486e-1739.13Heat shock factor protein OS=Saccharomyces cerevis... [more]
HSF3_CHICK1.277e-1643.69Heat shock factor protein 3 OS=Gallus gallus GN=HS... [more]
HSF_XENLA1.668e-1642.45Heat shock factor protein OS=Xenopus laevis GN=hsf... [more]
HSF1_MOUSE6.337e-1641.28Heat shock factor protein 1 OS=Mus musculus GN=Hsf... [more]
HSF1_HUMAN6.337e-1641.28Heat shock factor protein 1 OS=Homo sapiens GN=HSF... [more]
HSF1_BOVIN6.337e-1642.20Heat shock factor protein 1 OS=Bos taurus GN=HSF1 ... [more]
HSF2_MOUSE2.408e-1530.41Heat shock factor protein 2 OS=Mus musculus GN=Hsf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290493 ID=CB290493; Name=CB290493; organism=Citrus sinensis; type=EST; length=796bp
GCACGTGGGAAGTCTTTAGCAATTAAATAGCATTGCAATTGAATTCTCAT
GAATTGCCCTCGTGGAGTCGTATTGGGTTTCTATTGTTGGGGCTGGGAGT
TCTTAACTGCAATTCTCATCTTCTCCAATATCCTTCTTCATCTTTAGATT
AATCTTCTTCTCTTTTAGCTAATTTCCCTCTTCAATATTTCCCTTCTTTT
TTTTTTTTTGGTCTTTTTAATTGTTTGCGATATTTGAAATATGGAGGCTA
CAAATAATATTACAATAAGCAGCTGCTGTGATGACAATAAGGGCCTACTG
GAATATGCCAGAAAATCAACACCCCCACCATTTCTGTTGAAGACTTACAT
GCTAATAGAGGATCCGGCCACCGATAACGTCATCTCGTGGAACGGCGACG
GCACCGGCTTCGTTGTCTGGCAGCCGGCCGAGTTTGCCCGGGATCTACTG
CCGACACTCTTCAAGCACAGCAACTTCTCTAGCTTTGTTCGCCAGCTCAA
TACTTACGGATTTCGAAAAGTAGCAACAAGCAGGTGGGAATTTTGCAACC
AAATGTTTAGAAAGGGGGAGAAAGATCTTTTATGCAAGATACGTCGAAGA
AAAGCATGGGCAAACAGGCAGCAAGCAGCAACGGCAGCAGCAACACAACA
AGAATCTCATGATGAAGATCAAAGGTCGTCGTCGTCGACGTCATCGTTGT
CGGAGTACAACACCCTAAGGGATGAGAATAAGCGTTTGAAGAAGGAGAAT
GGGAACTTAAGTTCGGAGCTTGTAAGCATGAAAAGGAAGTGCAAGG
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