CB290493

Overview
NameCB290493
Unique NameCB290493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF2_HUMAN (Heat shock factor protein 2 OS=Homo sapiens GN=HSF2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.408e-15
Identity = 52/171 (30.41%), Postives = 81/171 (47.37%), Query Frame = 1
Query:  310 RKSTPPPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA-----------TSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRK 789
            + S  P FL K + L+E+  T+  I+W+ +G  F+V     FA+++LP  FKH+N +SFVRQLN YGFRKV                EF +  F++G+ DLL  I+R+ + +                D  +          +  T+      LK EN +L  E+  ++ K
Sbjct:    3 QSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSK------PEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAK 167          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF1_CHICK (Heat shock factor protein 1 OS=Gallus gallus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.408e-15
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  331 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA-----------TSRWEFCNQMFRKGEKDLLCKIRRR 600
            FL K + L+EDP TD +I W+  G  F V+   +FA+++LP  FKH+N +SFVRQLN YGFRKV                EF +  F +G++ LL  I+R+
Sbjct:   23 FLTKLWTLVEDPETDPLICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPEKDDTEFQHPYFIRGQEHLLENIKRK 123          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF_SCHPO (Heat shock factor protein OS=Schizosaccharomyces pombe GN=hsf1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  331 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKV------------ATSRWEFCNQMFRKGEKDLLCKIRRRKA 606
            F  K Y ++ D +TD++I W+  G  F+V    +FA+ +LP  FKH+NFSSFVRQLN YGF KV                 EF N  F++ + +LLC + R+KA
Sbjct:   53 FSNKLYNMVNDSSTDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFHKVPHIQQGVLQSDSPNELLEFANPNFQRDQPELLCLVTRKKA 156          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF_KLULA (Heat shock factor protein OS=Kluyveromyces lactis GN=HSF PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  325 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA-----------TSRWEFCNQMFRKGEKDLLCKIRRRKAWAN 615
            P F+ K + ++ D + +  I W+  G   VV     F +++LP  FKHSNF+SFVRQLN YG+ KV             SRWEF N+ F++G++ LL  I R+K+  N
Sbjct:  195 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENENFKRGKEYLLENIVRQKSNTN 302          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF_DROME (Heat shock factor protein OS=Drosophila melanogaster GN=Hsf PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  325 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVAT----------SRWEFCNQMFRKGEKDLLCKIRRR 600
            P FL K + L++D  T+ +I W  DG  FV+   A+FA++LLP  +KH+N +SF+RQLN YGF K+ +             EF +  F++    LL +I+R+
Sbjct:   47 PAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 148          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: HSF2_CHICK (Heat shock factor protein 2 OS=Gallus gallus GN=HSF2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.662e-14
Identity = 49/166 (29.52%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  325 PPFLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVA-----------TSRWEFCNQMFRKGEKDLLCKIRRRKAWANRXXXXXXXXXXXESHDEDQRXXXXXXXXXEYNTLRDENKRLKKENGNLSSELVSMKRK 789
            P FL K + L+ +  ++ +I+W+ +G  F+V     FA+++LP  FKH+N +SFVRQLN YGFRKV                EF +  F++G +DLL  I+R+ + +                D  +          +  T+      LK+EN +L  E+  ++ K
Sbjct:   22 PAFLSKLWALVGEAPSNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHVDSGIVKLERDGLVEFQHPYFKQGREDLLEHIKRKVSSSR------PEENKISQEDLSKIISSAQKVEIKQETIESRLSALKRENESLWREVAELRAK 181          
BLAST of CB290493 vs. ExPASy Swiss-Prot
Match: PRR1_SCHPO (Transcription factor prr1 OS=Schizosaccharomyces pombe GN=prr1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.012e-13
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  331 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKV----------ATSRWEFCNQMFRKGEKDLLCKIRRR 600
            F+ K + ++E+P   +++ W+  G  F+V    EF + +LP  FKHSNF+SFVRQLN Y F KV              WEF +  F+   KDLL  I+R+
Sbjct:   10 FVRKLFNMLEEPEYRHILRWSDSGDSFIVLDTNEFTKTILPRHFKHSNFASFVRQLNKYDFHKVRHEEGAPSIYGEGAWEFRHDDFQLHHKDLLDNIKRK 109          
The following BLAST results are available for this feature:
BLAST of CB290493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HSF2_HUMAN2.408e-1530.41Heat shock factor protein 2 OS=Homo sapiens GN=HSF... [more]
HSF1_CHICK2.408e-1542.57Heat shock factor protein 1 OS=Gallus gallus GN=HS... [more]
HSF_SCHPO4.108e-1541.35Heat shock factor protein OS=Schizosaccharomyces p... [more]
HSF_KLULA5.365e-1539.81Heat shock factor protein OS=Kluyveromyces lactis ... [more]
HSF_DROME9.151e-1538.24Heat shock factor protein OS=Drosophila melanogast... [more]
HSF2_CHICK2.662e-1429.52Heat shock factor protein 2 OS=Gallus gallus GN=HS... [more]
PRR1_SCHPO1.012e-1339.00Transcription factor prr1 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bg12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bg12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290493 ID=CB290493; Name=CB290493; organism=Citrus sinensis; type=EST; length=796bp
GCACGTGGGAAGTCTTTAGCAATTAAATAGCATTGCAATTGAATTCTCAT
GAATTGCCCTCGTGGAGTCGTATTGGGTTTCTATTGTTGGGGCTGGGAGT
TCTTAACTGCAATTCTCATCTTCTCCAATATCCTTCTTCATCTTTAGATT
AATCTTCTTCTCTTTTAGCTAATTTCCCTCTTCAATATTTCCCTTCTTTT
TTTTTTTTTGGTCTTTTTAATTGTTTGCGATATTTGAAATATGGAGGCTA
CAAATAATATTACAATAAGCAGCTGCTGTGATGACAATAAGGGCCTACTG
GAATATGCCAGAAAATCAACACCCCCACCATTTCTGTTGAAGACTTACAT
GCTAATAGAGGATCCGGCCACCGATAACGTCATCTCGTGGAACGGCGACG
GCACCGGCTTCGTTGTCTGGCAGCCGGCCGAGTTTGCCCGGGATCTACTG
CCGACACTCTTCAAGCACAGCAACTTCTCTAGCTTTGTTCGCCAGCTCAA
TACTTACGGATTTCGAAAAGTAGCAACAAGCAGGTGGGAATTTTGCAACC
AAATGTTTAGAAAGGGGGAGAAAGATCTTTTATGCAAGATACGTCGAAGA
AAAGCATGGGCAAACAGGCAGCAAGCAGCAACGGCAGCAGCAACACAACA
AGAATCTCATGATGAAGATCAAAGGTCGTCGTCGTCGACGTCATCGTTGT
CGGAGTACAACACCCTAAGGGATGAGAATAAGCGTTTGAAGAAGGAGAAT
GGGAACTTAAGTTCGGAGCTTGTAAGCATGAAAAGGAAGTGCAAGG
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