CB290498

Overview
NameCB290498
Unique NameCB290498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1856 contig Csv1_Contig1856:595..1422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_HAEIE (L-lactate dehydrogenase [cytochrome] OS=Haemophilus influenzae (strain PittEE) GN=lldD PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.551e-28
Identity = 65/180 (36.11%), Postives = 103/180 (57.22%), Query Frame = -2
Query:  234 PHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 773
            PH TL N    Y+G+    DD     ++    D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G D+ + LALGA    +GR   ++L   G  GV  +L + + E  + M L+  R++ +I    +V
Sbjct:  201 PH-TLGNVS-TYMGRQIGLDD--YIGWLTENFDPSISWKDLEWIREFWEGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVLSSARALPPIADAVKGDIKIIADSGIRNGLDIVRMLALGADATMLGRAFVYALGAAGRQGVENMLDIFKKEMRVAMTLTSNRTIADIKPEALV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_HAEI8 (L-lactate dehydrogenase [cytochrome] OS=Haemophilus influenzae (strain 86-028NP) GN=lldD PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.026e-28
Identity = 65/180 (36.11%), Postives = 103/180 (57.22%), Query Frame = -2
Query:  234 PHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 773
            PH TL N    Y+G+    DD     ++    D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G D+ + LALGA    +GR   ++L   G  GV  +L + + E  + M L+  R++ +I    +V
Sbjct:  201 PH-TLGNVS-TYMGRQIGLDD--YIGWLTENFDPSISWKDLEWIREFWEGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVLSSARALPPIADAVKGDIKIIADSGIRNGLDIVRMLALGADATMLGRAFVYALGAAGRQGVENMLDIFKKEMRVAMTLTSNRTIVDIKPEALV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_BARQU (L-lactate dehydrogenase [cytochrome] OS=Bartonella quintana GN=lldD PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.513e-28
Identity = 59/155 (38.06%), Postives = 93/155 (60.00%), Query Frame = -2
Query:  231 YVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVT 695
            ++    D S+ W D++W++      +++KG+L  +DA  A+Q+GA GI+VSNHG RQLD V +T  AL  + +   G + +  D GVR G DV + +A GA  V +GR   ++LA  GE GV  +L +  +E  + M L+G R++KEIT   + +
Sbjct:  223 WLGANFDPSIGWSDLQWIRDFWKGKMILKGILDPQDAREAVQFGADGIVVSNHGGRQLDGVLSTARALPAIAEVVTGDLTILADSGVRSGLDVVRMIAQGADAVMIGRAFIYALAAAGEKGVMHLLDLFANEMRVAMTLTGVRAVKEITHESLAS 377          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.517e-27
Identity = 63/148 (42.57%), Postives = 93/148 (62.84%), Query Frame = -2
Query:  228 SLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTH 671
            S +W+D+K+L+     PI++KG++   DA  A++YG  GI+VSNHG RQ D   A++  L ++V A   ++ V  D GVR G D+ KALALGA  V +GRP  + LA++G +GV  V++ L  + ELT+ LSG  S+K    N  V +
Sbjct:  257 SHDWEDLKFLRKHWDGPIVLKGIMNVPDAKKAVEYGMQGIVVSNHGGRQQDGGVASLTMLPKIVDAVGDKLDVLFDSGVRSGADIAKALALGAKMVLIGRPYVYGLALEGSSGVSHVIRCLLGDLELTLHLSGIVSVKPKDLNRDVLY 404          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LA2M_MYCSM (Lactate 2-monooxygenase OS=Mycobacterium smegmatis PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 1.112e-26
Identity = 61/141 (43.26%), Postives = 89/141 (63.12%), Query Frame = -2
Query:  249 SLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 671
            S+ W+D+ W+++IT +P+++KG+   +DA  A+  G  GI  SNHG RQ +     +  L EVV+A+ G  PV  D G+R G DV KALA+GAS V +GRP  +  A+ G  G+  V + L  E +L MA+ G R+LKE+T
Sbjct:  247 SVTWEDIDWVRSITKMPVILKGIQHPDDARRAVDSGVDGIYCSNHGGRQANGGLPALDCLPEVVKAS-GDTPVLFDSGIRTGADVVKALAMGASAVGIGRPYAWGAALGGSKGIEHVARSLLAEADLIMAVDGYRNLKELT 386          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD1_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 1 OS=Mycobacterium tuberculosis GN=lldD1 PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.096e-25
Identity = 65/176 (36.93%), Postives = 96/176 (54.55%), Query Frame = -2
Query:  249 PPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 776
            PP L + N      G+  +      A+Y          W+D+ WL+ +   P ++KGV+  +DA  A+  G + I VSNHG   LD  PA++ AL  V  A   +V V LDGG+RRG+DV KA+ALGA  V +GR   + LA +G+AGV  VL +LR   +  +   G  S+ +++
Sbjct:  204 PPDLRVPNQ-----GRRGEPGPPFFAAYGEWMATPPPTWEDIGWLRELWGGPFMLKGVMRVDDAKRAVDAGVSAISVSNHGGNNLDGTPASIRALPAVSAAVGDQVEVLLDGGIRRGSDVVKAVALGARAVMIGRAYLWGLAANGQAGVENVLDILRGGIDSALMGLGHASVHDLS 374          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD2_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 2 OS=Mycobacterium tuberculosis GN=lldD2 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.962e-23
Identity = 64/212 (30.19%), Postives = 102/212 (48.11%), Query Frame = -2
Query:  237 PRLGRREADIKNRFVLPPHLTLKNY----------------EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 824
            P  G R  D++N   +PP LTL+                  E L    +D+   + +  Y+    D SL + D+ W+++     ++VKG+ T +DA   +  G  GI++SNHG RQLD  P     L  V +       + +D G+  G D+  A+ALGA    +GR   + L   GEAGV + +++L+     TM L G   L+E++  H+
Sbjct:  191 PVAGARLRDVRNGMSIPPALTLRTVLDAMGHPRWWFDLLTTEPLAFASLDRWPGT-VGEYLNTVFDPSLTFDDLAWIKSQWPGKLVVKGIQTLDDARAVVDRGVDGIVLSNHGGRQLDRAPVPFHLLPHVARELGKHTEILVDTGIMSGADIVAAIALGARCTLIGRAYLYGLMAGGEAGVNRAIEILQTGVIRTMRLLGVTCLEELSPRHV 401          
The following BLAST results are available for this feature:
BLAST of CB290498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_HAEIE1.551e-2836.11L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LLDD_HAEI82.026e-2836.11L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LLDD_BARQU4.513e-2838.06L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
YKN3_SCHPO6.517e-2742.57Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]
LA2M_MYCSM1.112e-2643.26Lactate 2-monooxygenase OS=Mycobacterium smegmatis... [more]
LLDD1_MYCTU2.096e-2536.93Putative L-lactate dehydrogenase [cytochrome] 1 OS... [more]
LLDD2_MYCTU1.962e-2330.19Putative L-lactate dehydrogenase [cytochrome] 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290498 ID=CB290498; Name=CB290498; organism=Citrus sinensis; type=EST; length=828bp
TTTTTTTTTTTTTTTTAATAAAAAGCCCCAAGCCAAGCCACCCTTTGCCA
AGCCAAGCCGCACCTCCCTTTATTTAATTAATCCCTACATCCTTGTCGTC
TTAACAATATCCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAG
TTGTTTAAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAA
TCTGGCTACAGCTCCTGGAGTGTCCCAATGAGTCACAATGTGGTTGCGTG
TAATCTCCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAAC
TCATCACGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAAC
TGCCAGCGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTA
GAGCCAAAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGG
AAAACAGGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCAT
AACAGTTGCAGGGACATAATCTAGTTGGCGCGCTCCGTGATTGGATACAA
TGATTCCTGCAGCTCCATATTGTATTGCTAGACTTGCATCCTCAGCAGTA
AGAACACCCTTCACGAGTATTGGCAGTGAGGTGATTGTTTGAAGCCACTT
CACATCCTTCCAGTTCAGTGACCGGTCAATTTGGTTGGCAACATACGAAG
CTAATCCAGAGTCATCAGTCTTATCCATCTTGCCAATATACAAGCCCTCA
TAGTTCTTCAAAGTCAGATGTGGCGGCAAAACAAATCTGTTCTTAATATC
AGCTTCCCGACGGCCAAGCCTTGGAGTA
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