CB290498

Overview
NameCB290498
Unique NameCB290498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1856 contig Csv1_Contig1856:595..1422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_ECO45 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.601e-33
Identity = 68/169 (40.24%), Postives = 109/169 (64.50%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  210 YLGKPTGLED--YIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP7 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.092e-33
Identity = 67/169 (39.64%), Postives = 109/169 (64.50%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+ GV  +L ++  E ++ M L+G +S++EI+R+ +V
Sbjct:  210 YLGKPTGLED--YIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLNLIEKEMKVAMTLTGAKSIREISRDSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_CHRSD (L-lactate dehydrogenase [cytochrome] OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.092e-33
Identity = 68/170 (40.00%), Postives = 108/170 (63.53%), Query Frame = -2
Query:  231 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVT 740
            Y G+  + +D    +++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD VP+T  AL  +  A KG + +  D GVR G DV + +A+GA  + +GR   ++LA  GEAGV  +L++   E  + M L+G RS+ E+  + +VT
Sbjct:  210 YRGQPTELED--YIAWLGNNFDPSISWKDLEWIREFWDGPMIIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVPSTARALPAIADAVKGDLAILADSGVRNGLDVVRMIAMGADTILLGRAYIYALATAGEAGVAHLLELFEKEMRVAMTLTGARSIAELGSDSLVT 377          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_ENT38 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sp. (strain 638) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 66/169 (39.05%), Postives = 109/169 (64.50%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +++ EI+++ +V
Sbjct:  210 YLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGQAGVANLLNLIEKEMKVAMTLTGAKTISEISKDSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSM (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 69/179 (38.55%), Postives = 110/179 (61.45%), Query Frame = -2
Query:  204 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVA 740
            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V       A A
Sbjct:  210 YLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQELSKAPAAA 386          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 67/169 (39.64%), Postives = 108/169 (63.91%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  210 YLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 67/169 (39.64%), Postives = 108/169 (63.91%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  210 YLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 67/169 (39.64%), Postives = 108/169 (63.91%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  210 YLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 67/169 (39.64%), Postives = 108/169 (63.91%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  210 YLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSINEITQDSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_SHIBS (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 4 (strain Sb227) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 67/169 (39.64%), Postives = 108/169 (63.91%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  210 YLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
The following BLAST results are available for this feature:
BLAST of CB290498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_ECO451.601e-3340.24L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_KLEP72.092e-3339.64L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_CHRSD2.092e-3340.00L-lactate dehydrogenase [cytochrome] OS=Chromohalo... [more]
LLDD_ENT383.568e-3339.05L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]
LLDD_ECOSM3.568e-3338.55L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_SHISS4.659e-3339.64L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL4.659e-3339.64L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF84.659e-3339.64L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIDS4.659e-3339.64L-lactate dehydrogenase [cytochrome] OS=Shigella d... [more]
LLDD_SHIBS4.659e-3339.64L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290498 ID=CB290498; Name=CB290498; organism=Citrus sinensis; type=EST; length=828bp
TTTTTTTTTTTTTTTTAATAAAAAGCCCCAAGCCAAGCCACCCTTTGCCA
AGCCAAGCCGCACCTCCCTTTATTTAATTAATCCCTACATCCTTGTCGTC
TTAACAATATCCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAG
TTGTTTAAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAA
TCTGGCTACAGCTCCTGGAGTGTCCCAATGAGTCACAATGTGGTTGCGTG
TAATCTCCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAAC
TCATCACGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAAC
TGCCAGCGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTA
GAGCCAAAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGG
AAAACAGGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCAT
AACAGTTGCAGGGACATAATCTAGTTGGCGCGCTCCGTGATTGGATACAA
TGATTCCTGCAGCTCCATATTGTATTGCTAGACTTGCATCCTCAGCAGTA
AGAACACCCTTCACGAGTATTGGCAGTGAGGTGATTGTTTGAAGCCACTT
CACATCCTTCCAGTTCAGTGACCGGTCAATTTGGTTGGCAACATACGAAG
CTAATCCAGAGTCATCAGTCTTATCCATCTTGCCAATATACAAGCCCTCA
TAGTTCTTCAAAGTCAGATGTGGCGGCAAAACAAATCTGTTCTTAATATC
AGCTTCCCGACGGCCAAGCCTTGGAGTA
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