CB290498

Overview
NameCB290498
Unique NameCB290498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1856 contig Csv1_Contig1856:595..1422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCM (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lldD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.152e-32
Identity = 67/169 (39.64%), Postives = 104/169 (61.54%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y G   K +D     ++    D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +TV AL  +  A KG + + +D G+R G DV + LALGA    +GR   ++LA  G AGV  +L +   E  + M L+G +S+ E++R+ +V
Sbjct:  210 YRGSPTKLED--YIGWLGANFDPSISWKDLEWIRDFWDGPMIIKGILDTEDAKDAVRFGADGIVVSNHGGRQLDGVLSTVQALPAIADAVKGDLKILVDSGIRTGLDVVRMLALGADCTMLGRSFIYALAAQGRAGVENLLDLYEKEMRVAMTLTGAKSIAELSRDSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCH (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae GN=lldD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.152e-32
Identity = 67/169 (39.64%), Postives = 104/169 (61.54%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y G   K +D     ++    D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +TV AL  +  A KG + + +D G+R G DV + LALGA    +GR   ++LA  G AGV  +L +   E  + M L+G +S+ E++R+ +V
Sbjct:  210 YRGSPTKLED--YIGWLGANFDPSISWKDLEWIRDFWDGPMIIKGILDTEDAKDAVRFGADGIVVSNHGGRQLDGVLSTVQALPAIADAVKGDLKILVDSGIRTGLDVVRMLALGADCTMLGRSFIYALAAQGRAGVENLLDLYEKEMRVAMTLTGAKSIAELSRDSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_SALPC (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi C (strain RKS4594) GN=lldD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.152e-32
Identity = 66/169 (39.05%), Postives = 108/169 (63.91%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +++ EI+ + +V
Sbjct:  210 YLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGLLDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKTISEISGDSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_PSEMY (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas mendocina (strain ymp) GN=lldD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.152e-32
Identity = 69/162 (42.59%), Postives = 103/162 (63.58%), Query Frame = -2
Query:  234 SGLASYVA---NQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 710
            +GLA Y+       D S++WKD++W++     P+++KG+L  EDA  A+ +GA GIIVSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LAV G+AGV  +L ++  E  + M L+G +S+ EIT + +V
Sbjct:  215 TGLADYIGWLGANFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVTFGADGIIVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRTGLDVVRMLALGADTVLLGRAFIYALAVAGQAGVSNLLDLIEKEMRVAMVLTGAKSIAEITSDLLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_AZOC5 (L-lactate dehydrogenase [cytochrome] OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=lldD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.152e-32
Identity = 69/162 (42.59%), Postives = 103/162 (63.58%), Query Frame = -2
Query:  234 SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 710
            + LA Y+   A   D S++WKD++W+++    P+++KG+L   DA  A+ +GA GI+VSNHG RQLD V ++  AL  +  A    + V  D G+R G DV + LALGA GV +GR   ++LA  G+AGV  +L ++  E  + MAL+G RS+ EITR+ +V
Sbjct:  215 TNLADYIGWLAANFDPSISWKDLEWIRSFWKGPMIIKGILDPVDARDAVAFGADGIVVSNHGGRQLDGVLSSARALPAIADAVGDDLTVLADSGIRTGLDVVRMLALGAKGVLLGRAFAYALATHGQAGVANLLDLIEKEMRVAMALTGARSIAEITRDSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_AGRVS (L-lactate dehydrogenase [cytochrome] OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=lldD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.728e-32
Identity = 65/166 (39.16%), Postives = 102/166 (61.45%), Query Frame = -2
Query:  234 KMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 731
            +  KT+ +    ++    D S+ WKD++W++     P+++KG+L  EDA  A+++GA GIIVSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +A GA GV +GR   ++LA  G+AGV  +L +   E  + M L+G RS+ EI+ + +V
Sbjct:  211 RQQKTNLADYVGWLGENFDPSIGWKDLEWIRDFWKGPMIIKGILDPEDAKDAVRFGADGIIVSNHGGRQLDGVLSSARALPAIAAAVKGDLTILADSGIRSGLDVVRMIAQGADGVLIGRAFVYALAAAGQAGVENLLDLFAKEMRVAMTLTGARSIAEISPDSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAB (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lldD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.787e-32
Identity = 66/162 (40.74%), Postives = 103/162 (63.58%), Query Frame = -2
Query:  234 SGLASYVA---NQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 710
            +GL  Y+       D S+ WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGVR +L+++  E  + M L+G +S+ EI+ + +V
Sbjct:  215 TGLEDYIGWLGANFDPSIAWKDLEWIREFWDGPMVIKGILDPEDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_HAEDU (L-lactate dehydrogenase [cytochrome] OS=Haemophilus ducreyi GN=lldD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.148e-31
Identity = 70/180 (38.89%), Postives = 107/180 (59.44%), Query Frame = -2
Query:  234 PHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 773
            PH TL N  G Y GK    DD   A ++A+  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD   ++  AL  +  A KG + +  D G+R G DV + +ALGA    +GR   ++L+  G AGV  +L + R E  + M L+    + +I R+ +V
Sbjct:  201 PH-TLGNVSG-YTGKSVGLDD--YAVWLADNFDPSISWKDLEWIRDFWDGPMVIKGILDVEDAKDAVRFGADGIVVSNHGGRQLDGALSSAKALPSIADAVKGEIKILADSGIRNGLDVVRMIALGADATLIGRAFVYALSAAGRAGVENMLDIFRKEMHVAMTLTSNARISDINRDALV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_SERP5 (L-lactate dehydrogenase [cytochrome] OS=Serratia proteamaculans (strain 568) GN=lldD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.958e-31
Identity = 65/169 (38.46%), Postives = 105/169 (62.13%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y GK    +D     ++    D S++WKD+ W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  + +A KG + +  D G+R G DV + +ALGA GV +GR   ++LA  G+AGV  +L+++  E  + M L G +++ +I+ + +V
Sbjct:  210 YRGKPTSLED--YIGWLGTNFDPSISWKDLDWIREFWQGPMIIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVLSTAHALPAIAEAVKGDITLLADSGIRSGLDVVRMIALGADGVLLGRAFAYALAAAGQAGVANLLELIDKEMRVAMTLIGAKTIADISADSLV 376          
BLAST of CB290498 vs. ExPASy Swiss-Prot
Match: LLDD_VIBPA (L-lactate dehydrogenase [cytochrome] OS=Vibrio parahaemolyticus GN=lldD PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.361e-31
Identity = 65/169 (38.46%), Postives = 105/169 (62.13%), Query Frame = -2
Query:  234 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 740
            Y G+  K +D     ++    D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  +  A KG + +F+D G+R G DV + LALGA    +GR   ++LA  G AGV  +L +   E  + M L+G +++ +++R+ +V
Sbjct:  210 YRGEPTKLED--YIGWLGANFDPSISWKDLEWIRDFWDGPMVIKGILDEEDAKDAVRFGADGIVVSNHGGRQLDGVLSTAKALPSIADAVKGDLKIFVDSGIRTGLDVVRMLALGADCTLLGRSFVYALAAQGGAGVENLLDLYDKEMRVAMTLTGAKTIADLSRDSLV 376          
The following BLAST results are available for this feature:
BLAST of CB290498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_VIBCM5.152e-3239.64L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_VIBCH5.152e-3239.64L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_SALPC5.152e-3239.05L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_PSEMY5.152e-3242.59L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_AZOC55.152e-3242.59L-lactate dehydrogenase [cytochrome] OS=Azorhizobi... [more]
LLDD_AGRVS6.728e-3239.16L-lactate dehydrogenase [cytochrome] OS=Agrobacter... [more]
LLDD_PSEAB8.787e-3240.74L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_HAEDU1.148e-3138.89L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LLDD_SERP51.958e-3138.46L-lactate dehydrogenase [cytochrome] OS=Serratia p... [more]
LLDD_VIBPA4.361e-3138.46L-lactate dehydrogenase [cytochrome] OS=Vibrio par... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290498 ID=CB290498; Name=CB290498; organism=Citrus sinensis; type=EST; length=828bp
TTTTTTTTTTTTTTTTAATAAAAAGCCCCAAGCCAAGCCACCCTTTGCCA
AGCCAAGCCGCACCTCCCTTTATTTAATTAATCCCTACATCCTTGTCGTC
TTAACAATATCCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAG
TTGTTTAAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAA
TCTGGCTACAGCTCCTGGAGTGTCCCAATGAGTCACAATGTGGTTGCGTG
TAATCTCCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAAC
TCATCACGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAAC
TGCCAGCGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTA
GAGCCAAAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGG
AAAACAGGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCAT
AACAGTTGCAGGGACATAATCTAGTTGGCGCGCTCCGTGATTGGATACAA
TGATTCCTGCAGCTCCATATTGTATTGCTAGACTTGCATCCTCAGCAGTA
AGAACACCCTTCACGAGTATTGGCAGTGAGGTGATTGTTTGAAGCCACTT
CACATCCTTCCAGTTCAGTGACCGGTCAATTTGGTTGGCAACATACGAAG
CTAATCCAGAGTCATCAGTCTTATCCATCTTGCCAATATACAAGCCCTCA
TAGTTCTTCAAAGTCAGATGTGGCGGCAAAACAAATCTGTTCTTAATATC
AGCTTCCCGACGGCCAAGCCTTGGAGTA
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