CB290499

Overview
NameCB290499
Unique NameCB290499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1856 contig Csv1_Contig1856:85..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LLDD_CAUSK (L-lactate dehydrogenase [cytochrome] OS=Caulobacter sp. (strain K31) GN=lldD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.927e-24
Identity = 73/265 (27.55%), Postives = 121/265 (45.66%), Query Frame = 2
Query:   47 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKT-----------DDSGLASY---VANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            I++  ++   A+ +LP+ ++DY   GA  + TL  N +  + I  R R+L+DVS++   TT+ G   ++P+ +AP     M    GE          G    LS+ +   + EVS       +FQLY+ + R     L+ RA  AG  A+  TVD P  G R  D  +    P     +  + ++       +G M +            +++GL  +   +    D S+ WKD+ W++     P+++KGVL  EDA  A   GA
Sbjct:    3 ISSTTDFREAARRQLPRFLFDYIDGGAYAERTLARNVSDLADISLRQRVLKDVSRVSTRTTLFGVEQTLPVALAPVGLTGMYARRGEVQAARAAAAKGVPFCLSTVSVCDLAEVSRASSAPIWFQLYMLRDRGFMRDLLARAADAGATALVFTVDMPVPGARYRDAHSGMTGPNAAMRRLVQAVFKPGWAWDVGVMGRPHTLGNVAPVLGENTGLEDFMGWLGANFDPSIQWKDLDWIRDQWKGPLILKGVLDPEDAKAAADIGA 267          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LLDD_BART1 (L-lactate dehydrogenase [cytochrome] OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=lldD PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.012e-23
Identity = 74/266 (27.82%), Postives = 123/266 (46.24%), Query Frame = 2
Query:   47 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY--------IGKMDKTDDSG-LASYVANQI-------------DRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            I +  +Y   AK +LP  ++ Y   GA  + TL+ N +    +  R RILR V  +D++  +    + +PI++AP     M    GE          G   TLSS +   + EV     G  +FQLYV K R      ++RA  +G + +  TVD P  G R  D  +  +  P+  L+ +   +        +G M +  D G +++Y+  +I             D S+ W D++W++      +++KG+L  EDA  A+Q+GA
Sbjct:    3 IASTFDYRKAAKRRLPPFLFHYIDGGAYAEETLRRNCSDLQALALRQRILRQVGGVDLSIKLFEQRLDLPIVLAPVGLTGMYARRGEVQAAHAATAKGIPFTLSSVSVCPIAEVQEAVGGGFWFQLYVLKDRGFMRDALERAWASGVRTLVFTVDMPIPGARYRDAHSG-MSGPYAGLRRFLQAFTHPHWAWNVGIMGRPHDLGNVSTYLEKKIALDDYVGWLGANFDPSIGWHDLQWIRDFWKGKMILKGILDPEDAREAVQFGA 267          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LLDD_BARHE (L-lactate dehydrogenase [cytochrome] OS=Bartonella henselae GN=lldD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.138e-23
Identity = 76/269 (28.25%), Postives = 120/269 (44.61%), Query Frame = 2
Query:   47 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD--------------IKNRFVLP-----------PHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            I++ ++Y   AK +LP  ++ Y   GA  + T++ N      +  R RILR V ++D++T +    + +PI++AP     M    GE          G   TLSS +   + EV        +FQLYV K R     +++R+  +G + +  TVD P  G R  D              I   F+ P           PH  L N    Y+ K    DD     ++    D S+ W D++W++      +++KG+L  EDA  AIQ+GA
Sbjct:    3 ISSTLDYRKAAKRRLPPFLFHYIDGGAYAEETMRRNYADLQALALRQRILRGVGEVDLSTKLFDQTLDLPIILAPVGLTGMYARRGEVQAARAAVAKGIPFTLSSVSVCPIAEVQKAVGSAFWFQLYVLKDRGFMRDVLERSWASGVRTLVFTVDMPVPGARYRDAHSGMSGSYAGLRRILQAFIHPHWAWNVGIMGRPH-DLGNV-STYLQKKIALDD--YIGWLGANFDPSIGWHDLQWIRDFWKGKMILKGILDPEDAREAIQFGA 267          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LLDD1_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 1 OS=Mycobacterium tuberculosis GN=lldD1 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 77/261 (29.50%), Postives = 125/261 (47.89%), Query Frame = 2
Query:   77 AKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD----------TPRLGRR-----------EADIKNRF-------VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG 775
            AK +LPK VY    + +E   T+ +N  AFS + F P ++    K D++TTV+G  +S+P++I+PT  Q +  P GE          GT+M LSS+A+  +EEV +  P   FFQ+Y    R+  A+ V+RA +AG   + +T D          +P++              EA  + R+       + PP L + N      G+  +      A+Y          W+D+ WL+ +   P ++KGV+  +DA  A+  G
Sbjct:   16 AKRRLPKSVYSSLIAASEKGITVADNVAAFSELGFAPHVIGATDKRDLSTTVMGQEVSLPVIISPTGVQAV-DPGGEVAVARAAAARGTVMGLSSFASKPIEEVIAANPK-TFFQVYWQGGRDALAERVERARQAGAVGLVVTTDWTFSHGRDWGSPKIPEEMNLKTILRLSPEAITRPRWLWKFAKTLRPPDLRVPNQ-----GRRGEPGPPFFAAYGEWMATPPPTWEDIGWLRELWGGPFMLKGVMRVDDAKRAVDAG 269          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LLDD_BARQU (L-lactate dehydrogenase [cytochrome] OS=Bartonella quintana GN=lldD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 75/272 (27.57%), Postives = 127/272 (46.69%), Query Frame = 2
Query:   47 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEV-SSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKN-------------RFVLPPHLTLKNYEGLYIGKMDKTDDSG-LASYVANQI-------------DRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 778
            I++  +Y   AK +LP  ++ Y   GA  + T++ N      +  R RILR V ++D++  +    +++PI++AP     M    GE          G   TLSS +  S+ EV +  G G  +FQLYV K R     +++R+  AG + +  TVD P  G R  D  +             + V+ PH          +G M +  D G +++Y+  +I             D S+ W D++W++      +++KG+L  +DA  A+Q+GA
Sbjct:    3 ISSTFDYRKAAKRRLPPFLFHYIDGGAYAEETMRRNYADLQALALRQRILRQVGEVDLSIKLFDQRLNLPIVLAPVGLTGMYARRGEVKAARAAVAKGIPFTLSSVSVCSLAEVHAEVGSGF-WFQLYVLKDRGFMRDVLERSWLAGVRTLVFTVDMPVPGARYRDAHSGMSGPYAGLRRILQAVVHPHWAWN------VGIMGRPHDLGNVSTYLQKKITLEDYVGWLGANFDPSIGWSDLQWIRDFWKGKMILKGILDPQDAREAVQFGA 267          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: LA2M_MYCSM (Lactate 2-monooxygenase OS=Mycobacterium smegmatis PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.639e-19
Identity = 67/254 (26.38%), Postives = 118/254 (46.46%), Query Frame = 2
Query:   62 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEG--ECXXXXXXXXXGTIMTLSSWATSSVEEVSS-TGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIK-NRFVLPPHLTLKNYEGLYIGKMDKTDDSGL------------ASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG 775
            ++EA A++ LP  V  Y A G+ D+ T + N  AF      PR+L   ++ D++  + G   + P+  AP     +   +G  +          G     S+ A SS+E++    G    +FQLY  + R++    ++RAE AG+  + +T+DT   G R  D+  + F     L L NY    + +      SG+            A +       S+ W+D+ W+++IT +P+++KG+   +DA  A+  G
Sbjct:   29 DWEAHAQQALPPGVLSYVAGGSGDEHTQRANVEAFKHWGLMPRMLMAATERDLSVELWGKTWAAPMFFAPIGVIALCAQDGHGDAASAQASARTGVPYITSTLAVSSLEDIRKHAGDTPAYFQLYYPEDRDLAESFIRRAEEAGYDGLVITLDTWIFGWRPRDLTISNFPFLRGLCLTNYVTDPVFQKKFKAHSGVEAEGLRDNPRLAADFWHGLFGHSVTWEDIDWVRSITKMPVILKGIQHPDDARRAVDSG 282          
BLAST of CB290499 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.234e-18
Identity = 71/256 (27.73%), Postives = 121/256 (47.27%), Query Frame = 2
Query:   65 YEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEV-SSTGPGIRFFQLY--VTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKN---RFVLPPHL-------------TLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG 775
            +E LA E++ K    Y    A  + T  +N  +F +    P  L      D++TTV G     PI +AP   QK+ +PEGE               +S+ + +S E++  ++GPG R++QLY     H+++   L+ RA++ G + + +T+DT  LG R +D+ N    F+ P  +               K   G+ + +         A  V   I  S +W+D+K+L+     PI++KG++   DA  A++YG
Sbjct:   39 WEQLAVERMTKDAAGYVYGCAGKRETYDKNMESFKKWSIIPNRLIKSGFPDLSTTVFGQKYPFPIALAPVGVQKIFNPEGESGSCAAATREHIPYIISTASATSFEDIEKASGPGERWYQLYWPSNDHQDITISLLNRAKKTGCRVLIVTLDTFILGWRPSDMDNGYDPFLNPDSIGVEHGFSDPVFRKQFKEKHGVEVEENMLEAAKEFAGIVFPGI--SHDWEDLKFLRKHWDGPIVLKGIMNVPDAKKAVEYG 292          
The following BLAST results are available for this feature:
BLAST of CB290499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_CAUSK7.927e-2427.55L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_BART13.012e-2327.82L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_BARHE5.138e-2328.25L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD1_MYCTU6.711e-2329.50Putative L-lactate dehydrogenase [cytochrome] 1 OS... [more]
LLDD_BARQU1.495e-2227.57L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LA2M_MYCSM2.639e-1926.38Lactate 2-monooxygenase OS=Mycobacterium smegmatis... [more]
YKN3_SCHPO2.234e-1827.73Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bh04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bh04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290499 ID=CB290499; Name=CB290499; organism=Citrus sinensis; type=EST; length=780bp
GCCCGAGGGGAAGCCAAGCGATAGCATTATGACTTATATATCCGAGATCA
CCAATGTTATGGAGTATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGATG
GTTTATGACTACTATGCATCAGGTGCTGAGGACCAGTGGACTCTTCAGGA
AAACCGTAATGCATTCTCTAGGATTCTATTTCGACCACGCATTCTTAGAG
ATGTAAGCAAGATTGACATGACTACAACAGTCTTGGGCTTCAACATTTCC
ATGCCCATCATGATTGCTCCAACGGCATTTCAGAAAATGGCTCATCCTGA
AGGGGAGTGTGCAACAGCAAGGGCAGCCTCAGCAGCTGGCACAATCATGA
CATTATCTTCATGGGCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGA
CCTGGAATTCGCTTTTTCCAACTCTATGTGACCAAGCACAGGAATGTGGA
CGCACAGCTAGTAAAAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCC
TTACCGTCGATACTCCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGAAC
AGATTTGTTTTGCCGCCACATCTGACTTTGAAGAACTATGAGGGCTTGTA
TATTGGCAAGATGGATAAGACTGATGACTCTGGATTAGCTTCGTATGTTG
CCAACCAAATTGACCGGTCACTGAACTGGAAGGATGTGAAGTGGCTTCAA
ACAATCACCTCACTGCCAATACTCGTGAAGGGTGTTCTTACTGCTGAAGA
TGCAAGTCTAGCAATACAATATGGAGCTGC
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