CB290516

Overview
NameCB290516
Unique NameCB290516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9962 contig Csv1_Contig9962:37..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.966e-17
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG 568
            LD  VI + P F +S+    +  K  +ECAVCL+EFE+ ET R++P C H FH +CID W  SH+TCP+CRS + S  G
Sbjct:   95 LDPNVIKSLPVFTFSD----ETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAG 169          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL4J_ARATH (RING-H2 finger protein ATL4J OS=Arabidopsis thaliana GN=ATL4J PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.766e-17
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 562
            LD+  I++ P F +S +K  K G   L+C+VCL++FE  E LRL+PKC H FH  CID WLE H TCP+CR  ++ E
Sbjct:   98 LDKTAIESLPLFRFSALKGSKQG---LDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSME 171          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.766e-17
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  392 KVGKGALE---CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA---------SEPGETTP--QPSELGSSEVDLE 619
            K G G +E   C VCLNEFE+DE+LRL+PKC+H FH  CID WL SHT CP+CR+ +A         S P E TP    S L +  VD E
Sbjct:  166 KRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLENDGVDEE 255          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1F_ARATH (RING-H2 finger protein ATL1F OS=Arabidopsis thaliana GN=ATL1F PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.766e-17
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSSEVDL 616
            LD ++I++FP + YS VK      G  +C++CL EF DD+T+RLI  C+H FH  CID W E H TCPVCR  L  E   +  +P E+   E+DL
Sbjct:  131 LDSKIIESFPEYPYS-VKD----HGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDVEDRTSLEKPLEV--PEIDL 218          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.968e-16
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  392 KVGKGAL---ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN--LASEP----GETTPQPSELGSSEVDLEAQNDAA 637
            K G+G +   EC+VCLNEFE+DE+LRL+PKC H FH  CID WL SH  CP+CR+   L +EP     ET  QP    S+  DL  + D++
Sbjct:  124 KKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESSN--DLRGRQDSS 212          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.358e-16
Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR-----SNLASEPGETTPQPSELGSSEVD 613
            LD+  ID  P F+Y  V T+ + +   +CAVCLNEF D + LRL+P C H FH  CID WL S++TCP+CR     SN+     ET   P   G  +VD
Sbjct:  181 LDQTAIDALPVFLYGNV-TISLEQ-PFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSNVCYNHSETLVAPLS-GHQQVD 276          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL3L_ARATH (RING-H2 finger protein ATL3L OS=Arabidopsis thaliana GN=ATL3L PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALE-CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQP 586
            LD  V++  P FVYS    +K  +  LE C+VCL+EFE+D+  R++PKC HVFH +CID W  S ++CP+CR+ +      T P+P
Sbjct:   88 LDPTVLEKIPIFVYS----VKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEP 169          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.727e-16
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGK-------GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSE 592
            +D EV+ + P  VYS        K         +ECAVCL E ED E  R +P+C H FH EC+D WL SH+TCP+CR  +   P    P P E
Sbjct:   99 VDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPLPPVPPE 192          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGA-------LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQP 586
            LD+  ID  P F Y E+     G G         +CAVCL EF + + LRL+P C H FH  CID WL+S++TCP+CR  L S PG +   P
Sbjct:  108 LDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFS-PGFSMENP 198          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL2N_ARATH (RING-H2 finger protein ATL2N OS=Arabidopsis thaliana GN=ATL2N PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 604
            LD+ V+D  P FVYS  K     +   EC+VCL+EFE+++  RL+PKC H FH +CID W  S +TCP+CR+     P +   Q  E GSS
Sbjct:   81 LDQAVLDKIPIFVYSS-KNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRA-----PVQPPFQVIETGSS 165          
The following BLAST results are available for this feature:
BLAST of CB290516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ATL3F_ARATH3.966e-1749.37RING-H2 finger protein ATL3F OS=Arabidopsis thalia... [more]
ATL4J_ARATH6.766e-1750.65RING-H2 finger protein ATL4J OS=Arabidopsis thalia... [more]
ATL1O_ARATH6.766e-1751.11RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]
ATL1F_ARATH6.766e-1746.32RING-H2 finger protein ATL1F OS=Arabidopsis thalia... [more]
ATL5F_ARATH1.968e-1649.45RING-H2 finger protein ATL5F OS=Arabidopsis thalia... [more]
ATL3I_ARATH3.358e-1645.45RING-H2 finger protein ATL3I OS=Arabidopsis thalia... [more]
ATL3L_ARATH4.385e-1645.35RING-H2 finger protein ATL3L OS=Arabidopsis thalia... [more]
EL5_ORYSJ5.727e-1642.55E3 ubiquitin-protein ligase EL5 OS=Oryza sativa su... [more]
ATL5I_ARATH1.276e-1544.57RING-H2 finger protein ATL5I OS=Arabidopsis thalia... [more]
ATL2N_ARATH1.666e-1546.15RING-H2 finger protein ATL2N OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290516 ID=CB290516; Name=CB290516; organism=Citrus sinensis; type=EST; length=748bp
GCCCTTGGCAATAATGGGGTCACGACTCTTACCCTACTCCGCCAAACATG
GGACCAATCCCCTTTCTCTCCAGCTCCTCATGCTCCTCGTGGCCCACGCG
CTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGCCCCCGGGCTCCGTCGA
CCCCTACTCCAACATGAAATTCAGCCCCTCACTCGCCATAATAATCGTCG
TGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTCTCCATCTACATTCGC
CACTGCTCCGACTCCAGCAACTCCGTCATCCGCCCCGCCGGCGCCGGAGG
CAACCGCTCCAGGCGCGGCGCCGCCCGCGGCCTCGACCGCGAGGTCATCG
ACACTTTCCCGACCTTCGTGTACTCGGAGGTCAAGACGCTGAAGGTCGGC
AAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGAGTTCGAGGATGACGA
AACGCTGCGTTTGATCCCGAAATGCGACCACGTCTTCCACCCCGAGTGCA
TCGACGCCTGGCTTGAATCGCACACCACGTGTCCTGTTTGCCGCTCGAAT
TTGGCCTCTGAACCCGGTGAGACAACTCCTCAACCCAGTGAGCTGGGCTC
ATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCGCGGTAGCAGCAGAGA
CTCCACAAGAAACACAACCACAGCCACAAGGCTCACAACCACCGGAACCT
CAAGTTATCAGCGTCAACTTTGCTAATCAAACGCTTAATAGGAACCGT
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