CB290516

Overview
NameCB290516
Unique NameCB290516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9962 contig Csv1_Contig9962:37..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 544
            ++++ +  FP   YS    L  G G  EC +CL++F   E +R++PKC H FH  CID WL+ H TCP CR
Sbjct:  110 INKKALRMFPVVSYSPEMNLP-GLGE-ECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCR 178          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.558e-12
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  335 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 580
            D E I   PT   +E     VG G LEC VC  ++   E++R +P C+H+FH +CI  WLE H TCPVCR +L+ +   T P
Sbjct:  204 DTEKIQALPTIQITEEH---VGSG-LECPVCKEDYTVGESVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 280          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5J_ARATH (RING-H2 finger protein ATL5J OS=Arabidopsis thaliana GN=ATL5J PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.558e-12
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 2
Query:  383 KTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 556
            + L V   + ECAVCL + E  ++ RL+P C+H FH  C D WL +HT CPVCR+ LA
Sbjct:   93 RELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRAELA 150          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.118e-11
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 2
Query:  335 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 580
            D E I   PT   +E     VG G LEC VC  ++   E +R +P C+H+FH +CI  WLE H TCPVCR +L+ +   T P
Sbjct:  205 DNEKIQALPTIQITEEH---VGSG-LECPVCKEDYTVGECVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 281          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.118e-11
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  338 REVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL--ASEPGETTPQPSELGSSE 607
            R+ + +F T  YS    L +     ECA+CL+EF  +E ++L+P C H FH  CID WL SH++CP CR  L    E      Q S L S++
Sbjct:  107 RKALKSFQTVSYST--ELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQ 196          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 2
Query:  335 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 604
            D+E I + PT   ++ +        LEC VC  ++  +E +R +P C+H FH  CI  WLE H TCPVCR +L  E      Q SE  +S
Sbjct:  206 DKEKITSLPTVTVTQEQV----NTGLECPVCKEDYTVEEKVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQTQSSEASAS 290          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553
            L ++V+ + P   YS        +  +ECA+CL EF   + LR++P+C H FH  CID WL SH++CP CR  L
Sbjct:   78 LKKKVLRSLPKLTYSPDSP--PAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQIL 149          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11
Identity = 40/120 (33.33%), Postives = 56/120 (46.67%), Query Frame = 2
Query:  332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS----------------NLASEPGETTPQPSELGSSEVDLEAQNDAAVA 643
            LD  VI + P FVY E +  +  +   EC +CL  +E  +  R +  C H FH ECID WL SH+TCP+CRS                N   E  E   Q S  G +E ++      +++
Sbjct:  112 LDSSVISSIPLFVYEENEEEEDEEE--ECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPVLAAVSDEENLKLAVNAVEEEAEVRLQMSPAGENESNVSGDRRVSLS 229          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 2
Query:  335 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 580
            D+E I   PT   +E     VG G LEC VC  ++   E++R +P C+H+FH  CI  WLE H +CPVCR +L  +   T P
Sbjct:  208 DKEKIQALPTVPVTEEH---VGSG-LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 284          
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  335 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 580
            D + I   PT   +E     VG G LEC VC  ++   E++R +P C+H+FH +CI  WLE H TCPVCR +L+ +   T P
Sbjct:  205 DTDKIQALPTIQITEEH---VGFG-LECPVCKEDYTVGESVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 281          
The following BLAST results are available for this feature:
BLAST of CB290516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ATL1I_ARATH6.553e-1243.66RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]
RN126_XENTR8.558e-1243.90RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
ATL5J_ARATH8.558e-1250.00RING-H2 finger protein ATL5J OS=Arabidopsis thalia... [more]
R126A_XENLA1.118e-1143.90RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
ATL1L_ARATH1.118e-1140.22RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
RN115_MOUSE1.907e-1138.89RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
ATL1R_ARATH1.907e-1141.89RING-H2 finger protein ATL1R OS=Arabidopsis thalia... [more]
ATL5O_ARATH2.490e-1133.33RING-H2 finger protein ATL5O OS=Arabidopsis thalia... [more]
RN126_MOUSE3.252e-1142.68RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
R126B_XENLA4.247e-1142.68RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290516 ID=CB290516; Name=CB290516; organism=Citrus sinensis; type=EST; length=748bp
GCCCTTGGCAATAATGGGGTCACGACTCTTACCCTACTCCGCCAAACATG
GGACCAATCCCCTTTCTCTCCAGCTCCTCATGCTCCTCGTGGCCCACGCG
CTCCCCCTCTCGCTCGCCCAGCGCAGCCCCGAGCCCCCGGGCTCCGTCGA
CCCCTACTCCAACATGAAATTCAGCCCCTCACTCGCCATAATAATCGTCG
TGTTGATTTCGGCTCTCTTCTTCATGGGCTTCTTCTCCATCTACATTCGC
CACTGCTCCGACTCCAGCAACTCCGTCATCCGCCCCGCCGGCGCCGGAGG
CAACCGCTCCAGGCGCGGCGCCGCCCGCGGCCTCGACCGCGAGGTCATCG
ACACTTTCCCGACCTTCGTGTACTCGGAGGTCAAGACGCTGAAGGTCGGC
AAAGGCGCGCTCGAGTGCGCCGTCTGCCTGAACGAGTTCGAGGATGACGA
AACGCTGCGTTTGATCCCGAAATGCGACCACGTCTTCCACCCCGAGTGCA
TCGACGCCTGGCTTGAATCGCACACCACGTGTCCTGTTTGCCGCTCGAAT
TTGGCCTCTGAACCCGGTGAGACAACTCCTCAACCCAGTGAGCTGGGCTC
ATCCGAGGTGGATCTCGAGGCCCAAAACGACGCCGCGGTAGCAGCAGAGA
CTCCACAAGAAACACAACCACAGCCACAAGGCTCACAACCACCGGAACCT
CAAGTTATCAGCGTCAACTTTGCTAATCAAACGCTTAATAGGAACCGT
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