CB290516
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12 Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 544 ++++ + FP YS L G G EC +CL++F E +R++PKC H FH CID WL+ H TCP CR Sbjct: 110 INKKALRMFPVVSYSPEMNLP-GLGE-ECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCR 178
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.558e-12 Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 2 Query: 335 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 580 D E I PT +E VG G LEC VC ++ E++R +P C+H+FH +CI WLE H TCPVCR +L+ + T P Sbjct: 204 DTEKIQALPTIQITEEH---VGSG-LECPVCKEDYTVGESVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 280
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5J_ARATH (RING-H2 finger protein ATL5J OS=Arabidopsis thaliana GN=ATL5J PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 8.558e-12 Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 2 Query: 383 KTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 556 + L V + ECAVCL + E ++ RL+P C+H FH C D WL +HT CPVCR+ LA Sbjct: 93 RELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRAELA 150
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.118e-11 Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 2 Query: 335 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 580 D E I PT +E VG G LEC VC ++ E +R +P C+H+FH +CI WLE H TCPVCR +L+ + T P Sbjct: 205 DNEKIQALPTIQITEEH---VGSG-LECPVCKEDYTVGECVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 281
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.118e-11 Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 2 Query: 338 REVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL--ASEPGETTPQPSELGSSE 607 R+ + +F T YS L + ECA+CL+EF +E ++L+P C H FH CID WL SH++CP CR L E Q S L S++ Sbjct: 107 RKALKSFQTVSYST--ELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQ 196
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11 Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 2 Query: 335 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 604 D+E I + PT ++ + LEC VC ++ +E +R +P C+H FH CI WLE H TCPVCR +L E Q SE +S Sbjct: 206 DKEKITSLPTVTVTQEQV----NTGLECPVCKEDYTVEEKVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQTQSSEASAS 290
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11 Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 553 L ++V+ + P YS + +ECA+CL EF + LR++P+C H FH CID WL SH++CP CR L Sbjct: 78 LKKKVLRSLPKLTYSPDSP--PAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQIL 149
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11 Identity = 40/120 (33.33%), Postives = 56/120 (46.67%), Query Frame = 2 Query: 332 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS----------------NLASEPGETTPQPSELGSSEVDLEAQNDAAVA 643 LD VI + P FVY E + + + EC +CL +E + R + C H FH ECID WL SH+TCP+CRS N E E Q S G +E ++ +++ Sbjct: 112 LDSSVISSIPLFVYEENEEEEDEEE--ECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPVLAAVSDEENLKLAVNAVEEEAEVRLQMSPAGENESNVSGDRRVSLS 229
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11 Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 2 Query: 335 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 580 D+E I PT +E VG G LEC VC ++ E++R +P C+H+FH CI WLE H +CPVCR +L + T P Sbjct: 208 DKEKIQALPTVPVTEEH---VGSG-LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 284
BLAST of CB290516 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11 Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 2 Query: 335 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 580 D + I PT +E VG G LEC VC ++ E++R +P C+H+FH +CI WLE H TCPVCR +L+ + T P Sbjct: 205 DTDKIQALPTIQITEEH---VGFG-LECPVCKEDYTVGESVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNP 281 The following BLAST results are available for this feature:
BLAST of CB290516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290516 ID=CB290516; Name=CB290516; organism=Citrus sinensis; type=EST; length=748bpback to top |