CB290519

Overview
NameCB290519
Unique NameCB290519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: C516B_DICDI (Probable cytochrome P450 516B1 OS=Dictyostelium discoideum GN=cyp516b1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.012e-13
Identity = 47/179 (26.26%), Postives = 77/179 (43.02%), Query Frame = -1
Query:  288 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFK------------GQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDW 788
            DL +AG++T + T+ W +  L ++              V K N           YL A ++E                 +D+++ G+ +PKG QV ++V+ +  DE  W +PH F PER+L SN   +             Q+   IPFG G R+C G+ +A    +     +  +F W
Sbjct:  283 DLIVAGHETVAITLGWMILFLSNHQDVQQKVYDELINVVGKGNLPALVHRKDTSYLNACIQETMRIRTAAPLALPRIASEDIKVGGYTIPKGTQVMMSVYGMASDERYWKDPHIFNPERWLSSNHSTENGGGGGGVVGNSSQSEVFIPFGVGPRMCVGMGVAKDELYYCASQMFMNFKW 461          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP2E1_MOUSE (Cytochrome P450 2E1 OS=Mus musculus GN=Cyp2e1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.321e-13
Identity = 50/179 (27.93%), Postives = 82/179 (45.81%), Query Frame = -1
Query:  261 ADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWK--LDNHNMDM 791
            ADLF AG +TTS+T+ + +  L+  P          ++ +         D   +PY+ AVV E                 +D    G+ +PKG  V   + ++  D   + +P TF PE FL  N  FK  ++    F AG+R+C G  LA     L+L +++  F+ K  +D  ++D+
Sbjct:  294 ADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIGPSRAPAVRDRMNMPYMDAVVHEIQRFINLVPSNLPHEATRDTVFRGYVIPKGTVVIPTLDSLLFDNYEFPDPETFKPEHFLNENGKFKYSDY-FKAFSAGKRVCVGEGLARMELFLLLSAILQHFNLKSLVDPKDIDL 471          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP2CD_RAT (Cytochrome P450 2C13, male-specific OS=Rattus norvegicus GN=Cyp2c13 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.321e-13
Identity = 48/168 (28.57%), Postives = 75/168 (44.64%), Query Frame = -1
Query:  285 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWK 788
            DLF AG +T SSTM +A+  L+  P          +  + +       D + +PY  A+V E                  D +   + +PKG  V  ++ ++  D   + NP  F P  FL  N +FK  ++  IPF AG+R+C G  LA     L L +++ +F  K
Sbjct:  293 DLFFAGIETVSSTMRFALLLLMKYPHVTAKVQEEIDHVIGRHRSPCMQDRSHMPYTNAMVHEVQRYIDIGPNGLLHEVTCDTKFRNYFIPKGTAVLTSLTSVLHDSKEFPNPEMFDPGHFLDENGNFKKSDY-FIPFSAGKRMCLGESLARMELFLFLTTILQNFKLK 459          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP270_MOUSE (Cytochrome P450 2C70 OS=Mus musculus GN=Cyp2c70 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.321e-13
Identity = 49/168 (29.17%), Postives = 74/168 (44.05%), Query Frame = -1
Query:  285 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWK 788
            DLF AG +TTSST+++ +  LL  P             + +       D   +PY  AV+ E                 +DVE  G+ +PKG  V   + ++  D+  + NP  F P  FL    +FK  ++  + F AGRR C G  LA     L+L +++  F  K
Sbjct:  292 DLFGAGTETTSSTVKYGLLLLLKYPEVTAKIQEEIAHVIGRHRRPTMQDRNHMPYTDAVLHEIQRYIDFVPIPSPRKTTQDVEFRGYHIPKGTSVMACLTSVLNDDKEFPNPEKFDPGHFLDEKGNFKKSDY-FVAFSAGRRACIGEGLARMEMFLILTNILQHFTLK 458          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP239_MOUSE (Cytochrome P450 2C39 OS=Mus musculus GN=Cyp2c39 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.321e-13
Identity = 46/177 (25.99%), Postives = 81/177 (45.76%), Query Frame = -1
Query:  258 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWKLDNHNMDME 788
            +LF AG +TTS+T+ +A+  L+  P          +  + +       D   +PY  A++ E                  D++   + +PKG  V  ++ ++  D   + NP  F P  FL +N +FK ++   +PF AG+R+C G  LA     L L +++ +F  K   H  D++
Sbjct:  293 NLFAAGTETTSTTLRYALLLLMKYPDVTAKVQEEIDHVIGRHRSPCMQDRNHMPYTDAMIHEVQRFINLVPNNIPRAVTCDIKFRNYLIPKGTTVVTSLTSVLHDSKEFPNPELFDPGHFLDANGNFK-KSDHFMPFSAGKRVCAGEGLARMELFLFLTTILQNFKLKPLVHPKDID 468          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP1A2_RAT (Cytochrome P450 1A2 OS=Rattus norvegicus GN=Cyp1a2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.321e-13
Identity = 51/189 (26.98%), Postives = 90/189 (47.62%), Query Frame = -1
Query:  234 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL--GSNADFKGQNFELIPFGAGRRICPG-LPLAIRMFHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQ 788
            D+F AG +T ++ + W++  L+  P          +  + +      SD  +LPYL+A + E                 +D  + GF +PK   +F+N W +  DE  W +P  F PERFL   + A  K  + +++ FG G+R C G +P    +F L L  L++  ++ +     +D+   +GLT++
Sbjct:  311 DIFGAGFETVTTAIFWSILLLVTEPKVQRKIHEELDTVIGRDRQPRLSDRPQLPYLEAFILEIYRYTSFVPFTIPHSTTRDTSLNGFHIPKECCIFINQWQVNHDEKQWKDPFVFRPERFLTNDNTAIDKTLSEKVMLFGLGKRRCIGEIPAKWEVF-LFLAILLHQLEFTVPPGVKVDLTPSYGLTMK 498          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP1A2_MACFA (Cytochrome P450 1A2 OS=Macaca fascicularis GN=CYP1A2 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.321e-13
Identity = 51/194 (26.29%), Postives = 87/194 (44.85%), Query Frame = -1
Query:  216 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF--KGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKAQPLH 788
            D+F AG DT ++ + W++  L+  P          +  + +      SD  +LPYL+A + E                 +D  + GF +P+   VF+N W +  D   W +P  F PERFL +      K  + +++ FG G+R C G  L      L L  L+   ++ +     +D+   +GLT++ A+  H
Sbjct:  313 DIFGAGFDTIATAISWSLMYLVTKPEIQRKIQKELDAVIGRGRRPRLSDRPQLPYLEAFILETFRHSSFVPFTIPHSTTRDTTLNGFYIPRECCVFINQWQVNHDPQLWGDPSEFRPERFLTAEGTTINKPLSEKIMLFGLGKRRCIGEVLGKWEVFLFLAILLQQLEFSVPPGVKVDLTPIYGLTMKHARCEH 506          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP27A_RAT (Sterol 26-hydroxylase, mitochondrial OS=Rattus norvegicus GN=Cyp27a1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13
Identity = 51/169 (30.18%), Postives = 72/169 (42.60%), Query Frame = -1
Query:  291 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKG---QNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFD 788
            +L +AG DTTS+T+ WA+  L  NP             V      +  D   +P L+AV+KE                 K+ EI GF  PK  Q  +  + + RD S +  P +F P R+L    D        F  +PFG G R C G  +A     L+L  LI  ++
Sbjct:  333 ELILAGVDTTSNTLTWALYHLSKNPEIQEALHKEVTGVVPFGKVPQNKDFAHMPLLKAVIKETLRLYPVVPTNSRIITEKETEINGFLFPKNTQFVLCHYVVSRDPSVFPEPESFQPHRWLRKREDDNSGIQHPFGSVPFGYGVRSCLGRRIAELEMQLLLSRLIQKYE 501          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP238_MOUSE (Cytochrome P450 2C38 OS=Mus musculus GN=Cyp2c38 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13
Identity = 46/177 (25.99%), Postives = 82/177 (46.33%), Query Frame = -1
Query:  258 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFDWKLDNHNMDME 788
            +LF AG +TTS+T+ +A+  L+  P          +  V +       D + +PY  A++ E                  D++   + +PKG  V  ++ ++  D   + NP  F P  FL +N +FK  ++  + F AG+R+C G  LA     L+L +++ +F  K   H  D++
Sbjct:  293 NLFAAGTETTSTTLRYALLLLMKYPDVTAKVQEEIDHVVGRHRSPCMQDRSHMPYTDAMIHEVQRFINLVPNNLPHAVTCDIKFRNYIIPKGTTVVTSLTSVLHDSKEFPNPEMFDPGHFLDANGNFKKSDY-FMTFSAGKRVCAGEGLARMELFLILTTILQNFKLKSLVHPKDID 468          
BLAST of CB290519 vs. ExPASy Swiss-Prot
Match: CP18A_DROME (Cytochrome P450 18a1 OS=Drosophila melanogaster GN=Cyp18a1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13
Identity = 46/166 (27.71%), Postives = 73/166 (43.98%), Query Frame = -1
Query:  291 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXEQTVCKCNPIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFPVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMFHLMLGSLINSFD 788
            DLF AG +T  +T+ W    +L NP          +Q V +       D+  LP  ++ + E                 +DVE+ G+ +P G+ V   + ++  D + W+ P  F P RF+ +    +   +  IPFG GRR+C G  LA     L   S ++ FD
Sbjct:  324 DLFSAGMETIKTTLLWINVFMLRNPKEMRRVQDELDQVVGRHRLPTIEDLQYLPITESTILESMRRSSIVPLATTHSPTRDVELNGYTIPAGSHVIPLINSVHMDPNLWEKPEEFRPSRFIDTEGKVRKPEY-FIPFGVGRRMCLGDVLARMELFLFFASFMHCFD 488          
The following BLAST results are available for this feature:
BLAST of CB290519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
C516B_DICDI1.012e-1326.26Probable cytochrome P450 516B1 OS=Dictyostelium di... [more]
CP2E1_MOUSE1.321e-1327.93Cytochrome P450 2E1 OS=Mus musculus GN=Cyp2e1 PE=1... [more]
CP2CD_RAT1.321e-1328.57Cytochrome P450 2C13, male-specific OS=Rattus norv... [more]
CP270_MOUSE1.321e-1329.17Cytochrome P450 2C70 OS=Mus musculus GN=Cyp2c70 PE... [more]
CP239_MOUSE1.321e-1325.99Cytochrome P450 2C39 OS=Mus musculus GN=Cyp2c39 PE... [more]
CP1A2_RAT1.321e-1326.98Cytochrome P450 1A2 OS=Rattus norvegicus GN=Cyp1a2... [more]
CP1A2_MACFA1.321e-1326.29Cytochrome P450 1A2 OS=Macaca fascicularis GN=CYP1... [more]
CP27A_RAT1.726e-1330.18Sterol 26-hydroxylase, mitochondrial OS=Rattus nor... [more]
CP238_MOUSE1.726e-1325.99Cytochrome P450 2C38 OS=Mus musculus GN=Cyp2c38 PE... [more]
CP18A_DROME1.726e-1327.71Cytochrome P450 18a1 OS=Drosophila melanogaster GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290519 ID=CB290519; Name=CB290519; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTTTCGCATGACTTTATAGTTTATTGAAGATCAACTC
TGTTAAGTTGCGTGTCTACATAAAAAAAAATAAGAGCGCCCACACCTGAG
AATGATTACACACACATATAACTAACCACCAAGCGCTTTATATAGTGGCT
ACCACCAAGCGCTTTATATATTGGCTACAAACTATAGTATAAAACTAGAT
GGCACCAGGGACAGCATGAAGGGGTTGAGCCTTCTGAACGGTGAGGCCAA
ATTTATCTTCCATGTCCATGTTGTGGTTATCAAGCTTCCAATCAAAAGAG
TTAATAAGGGAACCCAACATTAGATGGAACATTCTGATTGCCAATGGTAA
ACCAGGACAAATTCGTCGTCCAGCTCCGAAGGGAATTAGCTCAAAATTCT
GGCCTTTGAAATCAGCATTTGACCCTAAAAACCTTTCGGGAATAAAAGTG
TGAGGGTTGTCCCATGTGCTTTCATCTCTGCCAATAGCCCATACATTGAC
AAAAACTTGTGCACCTTTTGGCACTGGGAAGCCTGCAATTTCAACATCTT
TTGTGGCTTTGCGGGGAAGTAATAAGGGAGCTGCAGGGTGCAATCTCAAA
GTTTCTTTAACAACAGCTTGTAGATAAGGTAGCCGAGTGATGTCAGATTC
CTCAATTGGGTTACACTTGCAAACTGTTTGTTCTAGCTCCAATTTTGCTT
TCAATAAAGCCTCAGGGTTGTGGAGTAGTTCTGCCATTGCCCATTCCATT
GTACTTGAAGTTGTGTCATTCCCCGCAATAAACAAATCCGCCTCGTG
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