CB290538

Overview
NameCB290538
Unique NameCB290538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5877 contig Csv1_Contig5877:23..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_AKKM8 (Zinc transporter zupT OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=zupT PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.298e-26
Identity = 57/141 (40.43%), Postives = 89/141 (63.12%), Query Frame = -3
Query:  288 SGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASL 710
            SGI+ A+ I +HNFPEG+A F   +  L +G ++A+A+A+HNIPEG+AVA+P+Y+ T S+ +A   + LSG AEP+G  I  +     L+P +L  L  SV G+M F++  E+LP+A  +     ++  +  GM  M+  L
Sbjct:  129 SGILFALAIGIHNFPEGIATFAAGLDSLTLGTSIALAVAVHNIPEGIAVAVPLYYGTGSRKKALFYSFLSGLAEPVGAAIAMFFLFHFLTPTVLAVLFASVAGIMVFISFDELLPMAERWGHHHISIMGIIAGMLLMAIVL 269          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ENT38 (Zinc transporter zupT OS=Enterobacter sp. (strain 638) GN=zupT PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.695e-26
Identity = 64/162 (39.51%), Postives = 99/162 (61.11%), Query Frame = -3
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K+    R  +  + I+  +GISLHNFPEG+A ++ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKNAKPTRGNIKRTAILLTLGISLHNFPEGVATYVTASNNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLTWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGLSLVLLQ 252          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_DESOH (Zinc transporter zupT OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=zupT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.213e-26
Identity = 62/170 (36.47%), Postives = 106/170 (62.35%), Query Frame = -3
Query:  276 DEGGKDIMKKHRR-QVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVII--VAYLF-----PSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 761
            D G  D     R+ ++L  G+ TA+ I +HNFPEG+A FL ++    +G+ +A+AIALHNIPEG++V++P+++AT +K +AF  + +SG AEP+G ++  +  LF        + P+I+  L   V G+M ++++ E+LP +  Y     ++  +  GMA M+ASL  ++
Sbjct:  120 DTGAADCDDAGRKAKLLRMGLFTALAIGIHNFPEGLATFLAALSDPALGVAIALAIALHNIPEGISVSVPIFYATGNKTKAFAWSLVSGMAEPVGALLGYLGLLFFFGNPAGGMPPQIMGILFAGVAGIMVYISVDELLPTSRAYGRGHDSILGMVAGMAVMAASLLMMK 289          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_SALHS (Zinc transporter zupT OS=Salmonella heidelberg (strain SL476) GN=zupT PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.891e-26
Identity = 64/162 (39.51%), Postives = 99/162 (61.11%), Query Frame = -3
Query:  276 KDIMKKHRR----QVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K ++     +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKRQQPLPGSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAIFWAGISGMAEILGGVLAWLILGSLVSPIVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSIMGLSLVILQ 252          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ESCF3 (Zinc transporter zupT OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=zupT PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.891e-26
Identity = 64/162 (39.51%), Postives = 100/162 (61.73%), Query Frame = -3
Query:  276 KDIMKKHR----RQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K +    + +  + I+  +GISLHNFPEG+A F+ +   L +G+ +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKTQQPLPKSIRRTAILLTLGISLHNFPEGIATFVTASSNLELGMGIALAVALHNIPEGLAVAGPVYAATGSKRTAIFWAGISGMAEILGGVLAWLILGSLISPVVMAAVMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGLSLVVLQ 252          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_CORA7 (Zinc transporter zupT OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=zupT PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.891e-26
Identity = 61/147 (41.50%), Postives = 92/147 (62.59%), Query Frame = -3
Query:  288 RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASL 728
            R++++ +G+ TA  +++HNFPEG A FL  ++   + + +AVAIA+HNIPEG+AVA+P+  AT S+ +AF  ATLSG AEPLG +I   L    + P         + G+M F++L E+LP A +      A+  +  GMA M+ SL
Sbjct:  115 RKRLIKTGMFTAFALAIHNFPEGFATFLSGLEAPEIAIPVAVAIAIHNIPEGIAVAVPLRSATGSRKKAFWWATLSGLAEPLGALIGFALLMPFIGPMTFGISFAVIAGIMVFISLDELLPTAEETGEHHCAIYGLIAGMAVMAVSL 261          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_SHISS (Zinc transporter zupT OS=Shigella sonnei (strain Ss046) GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_SHIFL (Zinc transporter zupT OS=Shigella flexneri GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQLLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_SHIF8 (Zinc transporter zupT OS=Shigella flexneri serotype 5b (strain 8401) GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQLLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ECOSM (Zinc transporter zupT OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=zupT PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = -3
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252          
The following BLAST results are available for this feature:
BLAST of CB290538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ZUPT_AKKM81.298e-2640.43Zinc transporter zupT OS=Akkermansia muciniphila (... [more]
ZUPT_ENT381.695e-2639.51Zinc transporter zupT OS=Enterobacter sp. (strain ... [more]
ZUPT_DESOH2.213e-2636.47Zinc transporter zupT OS=Desulfococcus oleovorans ... [more]
ZUPT_SALHS2.891e-2639.51Zinc transporter zupT OS=Salmonella heidelberg (st... [more]
ZUPT_ESCF32.891e-2639.51Zinc transporter zupT OS=Escherichia fergusonii (s... [more]
ZUPT_CORA72.891e-2641.50Zinc transporter zupT OS=Corynebacterium aurimucos... [more]
ZUPT_SHISS3.775e-2639.51Zinc transporter zupT OS=Shigella sonnei (strain S... [more]
ZUPT_SHIFL3.775e-2639.51Zinc transporter zupT OS=Shigella flexneri GN=zupT... [more]
ZUPT_SHIF83.775e-2639.51Zinc transporter zupT OS=Shigella flexneri serotyp... [more]
ZUPT_ECOSM3.775e-2639.51Zinc transporter zupT OS=Escherichia coli (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290538 ID=CB290538; Name=CB290538; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTCTGAGGAAAGACAATAATAAAAACCTCCTAAGC
CTTTGGGGTCTTTTTCTTGTCACATACATTTTCCATTTGAGCGTACAATT
TTGAGTTGAATCATAAGAATTACTATTTTTCATAGCAGCTCCACAGGTTG
GCTTTTTGGCTAAAGAACAGTAAGGCAGGCAGCAACCTTATGATAGAAAC
CATCGAGGCAGTTCAGGAATGTACAAATGTCATGACATGTGGCAGCTACA
AGCTCATCTCTGCCGGCAAGCTGATTTCAAGAAAATATAAGCTTGCAGAC
ATGAAAGCCATCCCAACGAATACAGCTTTCACGGCTTGCTTCTGACCCGC
ATAATCAAAGGCCAACGGCAGCATTTCATGCAAAGTTAGGAAGGCCATCA
CTCCCCCAACTGATCCTAGCAAACCCTCGAGAATTTCAGGACTTAAACTG
CTTGGAAATAAGTAGGCCACAATTATAACTCCAAGAGGCTCCGCAAAACC
AGAAAGAGTAGCCAATTTGAATGCCTGCCACTTGCTCTGTGTTGCAAAAT
AAACAGGAAGAGCAACAGCAACACCCTCAGGGATGTTGTGCAAAGCAATG
GCAACTGCCAAATTAAGGCCAACACGAAGGCCCTTCATTGATCCAAGAAA
TACGGCCATTCCCTCAGGAAAATTGTGCAAGCTTATGCCTACGGCTGTAA
TAATCCCACTAAAAAGAACTTGGCGACGATGCTTTTTCATAATGTCCTTA
CCCCCTTCATCCTTGTTTTTCTTTTTAC
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