CB290538

Overview
NameCB290538
Unique NameCB290538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5877 contig Csv1_Contig5877:23..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_SALA4 (Zinc transporter zupT OS=Salmonella agona (strain SL483) GN=zupT PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.410e-26
Identity = 63/162 (38.89%), Postives = 99/162 (61.11%), Query Frame = -3
Query:  276 KDIMKKHRR----QVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+++K ++     +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLVQKRQQPLPGSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAIFWAGISGMAEILGGVLAWLILGSLVSPIVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSIMGLSLVILQ 252          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_ECO7I (Zinc transporter zupT OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=zupT PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.410e-26
Identity = 64/162 (39.51%), Postives = 97/162 (59.88%), Query Frame = -3
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++  V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAVVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_SHIDS (Zinc transporter zupT OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=zupT PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.098e-25
Identity = 63/162 (38.89%), Postives = 97/162 (59.88%), Query Frame = -3
Query:  276 KDIMKKH----RRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 749
            +D+M+K      + +  + I+  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AV  PVY AT SK  A   A +SG AE LG ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:   91 QDLMQKSVQPLPKSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVVGPVYAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQ 252          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: ZUPT_SALAR (Zinc transporter zupT OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=zupT PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.451e-25
Identity = 59/145 (40.69%), Postives = 89/145 (61.38%), Query Frame = -3
Query:  276 SGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFMSASLYFLE 710
            + ++  +GISLHNFPEG+A F+ +   L +G  +A+A+ALHNIPEG+AVA PVY AT SK  A   A +SG AE  G ++   +  S +SP ++  ++ +V G+M  L++ E++PLA +          V  GM+ M  SL  L+
Sbjct:  108 TAVLLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAIFWAGISGMAEIFGGVLAWLILGSLVSPIVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGMSVMGLSLVILQ 252          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: GUFA_MYXXA (Protein gufA OS=Myxococcus xanthus GN=gufA PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 45/134 (33.58%), Postives = 74/134 (55.22%), Query Frame = -3
Query:  312 SGIITAVGISLHNFPEGMAVFLG-SMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVG 710
            S ++  + ++LHNFPEG+AV +  +     +GL++A+ I   NIPEG+ VAL +  +  S  +A  LA L+G  EP+G +    +   SLS  +L   L   GG M ++  HEM+P +     +++A   +  G
Sbjct:  111 SALLFVLAMTLHNFPEGLAVGVSFAAPQPELGLSVALGIGAQNIPEGLVVALALRASGASASRAAFLALLTGMVEPVGALF--GVLALSLSSALLPWGLAFAGGAMLYVISHEMIPESHRGGFEREATTGLMWG 242          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: S39AB_MOUSE (Zinc transporter ZIP11 OS=Mus musculus GN=Slc39a11 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12
Identity = 47/138 (34.06%), Postives = 68/138 (49.28%), Query Frame = -3
Query:  300 VGISLHNFPEGMAVFLG-------SMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFM 692
            + I++HN PEG+AV +G       +        NLA+ I + N PEG+AV+LP+  A  S W+AF    LSG  EPL  +  A  F   L+  IL   L    G M ++ + +++P A      K A  A  +G   M
Sbjct:  199 LAITIHNIPEGLAVGVGFGAVEKTASATFESARNLAIGIGIQNFPEGLAVSLPLRGAGFSTWKAFWYGQLSGMVEPLAGVFGA--FAVVLAEPILPYALAFAAGAMVYVVMDDIIPEAQISGNGKLASWASILGFVVM 334          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: S39AB_RAT (Zinc transporter ZIP11 OS=Rattus norvegicus GN=Slc39a11 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12
Identity = 46/138 (33.33%), Postives = 68/138 (49.28%), Query Frame = -3
Query:  300 VGISLHNFPEGMAVFLG-------SMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFM 692
            + I++HN PEG+AV +G       +        NLA+ I + N PEG+AV+LP+  A  S W+AF    LSG  EPL  +  A  F   L+  +L   L    G M ++ + +++P A      K A  A  +G   M
Sbjct:  192 LAITIHNIPEGLAVGVGFGAVEKTASATFESARNLAIGIGIQNFPEGLAVSLPLRGAGFSTWKAFWYGQLSGMVEPLAGVFGA--FAVVLAEPVLPYALAFAAGAMVYVVMDDIIPEAQISGNGKLASWASILGFVVM 327          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: S39AB_HUMAN (Zinc transporter ZIP11 OS=Homo sapiens GN=SLC39A11 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12
Identity = 47/138 (34.06%), Postives = 68/138 (49.28%), Query Frame = -3
Query:  300 VGISLHNFPEGMAVFLG-------SMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFM 692
            + I++HN PEG+AV +G       +        NLA+ I + N PEG+AV+LP+  A  S W+AF    LSG  EPL  +  A  F   L+  IL   L    G M ++ + +++P A      K A  A  +G   M
Sbjct:  199 LAITIHNVPEGLAVGVGFGAIEKTASATFESARNLAIGIGIQNFPEGLAVSLPLRGAGFSTWRAFWYGQLSGMVEPLAGVFGA--FAVVLAEPILPYALAFAAGAMVYVVMDDIIPEAQISGNGKLASWASILGFVVM 334          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: S39AB_BOVIN (Zinc transporter ZIP11 OS=Bos taurus GN=SLC39A11 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.540e-11
Identity = 47/138 (34.06%), Postives = 68/138 (49.28%), Query Frame = -3
Query:  300 VGISLHNFPEGMAVFLG-------SMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIIVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVKAVFVGMAFM 692
            + I++HN PEG+AV +G       +        NLA+ I + N PEG+AV+LP+  A  S W+AF    LSG  EPL  +  A  F   L+  IL   L    G M ++ + +++P A      K A  A  +G   M
Sbjct:  198 LAITIHNIPEGLAVGVGFGAVGKTASATFESARNLALGIGIQNFPEGLAVSLPLRGAGFSTWRAFWYGQLSGMVEPLAGVFGA--FAVVLAEPILPYALAFAAGAMVYVIMDDIIPEAQISGNGKLASWASILGFVVM 333          
BLAST of CB290538 vs. ExPASy Swiss-Prot
Match: YQF9_SCHPO (Uncharacterized zinc transporter C126.09 OS=Schizosaccharomyces pombe GN=SPCC126.09 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.642e-11
Identity = 58/164 (35.37%), Postives = 84/164 (51.22%), Query Frame = -3
Query:  273 KHRRQVLFSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAVAIALHNIPEGVAVALPVYFATQSKWQAF-KLATLSGFAEPLGVIIVAYLFPSS--LSPEILEGLLGSV----GGVMAFLTLHEMLP--LAFDYAGQKQAVKAVF-VGMAFMSASLYFLEI 734
            +H   V   GI TA+ I LH  PEG   FL S   +  G  + VA+++HNI EG  +A P+Y A +S+ +AF   ATLS  + PLG +I   +  +    S + L  L G +     G+M  L+L  +LP  L  D++  K+     F +G+ F      FLEI
Sbjct:  257 EHIHSVYTMGIQTALLICLHKVPEGFITFLAST--VDTGFMVLVAMSIHNIVEGFTIAYPLYLAWKSRPKAFLTAATLSSCSLPLGSLIAFLVMEAGGIGSSDFLNFLYGIIFAGTAGMMLILSLRVILPEALRHDHSENKRHSFICFTIGILF----TLFLEI 414          
The following BLAST results are available for this feature:
BLAST of CB290538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ZUPT_SALA48.410e-2638.89Zinc transporter zupT OS=Salmonella agona (strain ... [more]
ZUPT_ECO7I8.410e-2639.51Zinc transporter zupT OS=Escherichia coli O7:K1 (s... [more]
ZUPT_SHIDS1.098e-2538.89Zinc transporter zupT OS=Shigella dysenteriae sero... [more]
ZUPT_SALAR5.451e-2540.69Zinc transporter zupT OS=Salmonella arizonae (stra... [more]
GUFA_MYXXA4.052e-1233.58Protein gufA OS=Myxococcus xanthus GN=gufA PE=4 SV... [more]
S39AB_MOUSE6.912e-1234.06Zinc transporter ZIP11 OS=Mus musculus GN=Slc39a11... [more]
S39AB_RAT9.027e-1233.33Zinc transporter ZIP11 OS=Rattus norvegicus GN=Slc... [more]
S39AB_HUMAN9.027e-1234.06Zinc transporter ZIP11 OS=Homo sapiens GN=SLC39A11... [more]
S39AB_BOVIN1.540e-1134.06Zinc transporter ZIP11 OS=Bos taurus GN=SLC39A11 P... [more]
YQF9_SCHPO7.642e-1135.37Uncharacterized zinc transporter C126.09 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290538 ID=CB290538; Name=CB290538; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTCTGAGGAAAGACAATAATAAAAACCTCCTAAGC
CTTTGGGGTCTTTTTCTTGTCACATACATTTTCCATTTGAGCGTACAATT
TTGAGTTGAATCATAAGAATTACTATTTTTCATAGCAGCTCCACAGGTTG
GCTTTTTGGCTAAAGAACAGTAAGGCAGGCAGCAACCTTATGATAGAAAC
CATCGAGGCAGTTCAGGAATGTACAAATGTCATGACATGTGGCAGCTACA
AGCTCATCTCTGCCGGCAAGCTGATTTCAAGAAAATATAAGCTTGCAGAC
ATGAAAGCCATCCCAACGAATACAGCTTTCACGGCTTGCTTCTGACCCGC
ATAATCAAAGGCCAACGGCAGCATTTCATGCAAAGTTAGGAAGGCCATCA
CTCCCCCAACTGATCCTAGCAAACCCTCGAGAATTTCAGGACTTAAACTG
CTTGGAAATAAGTAGGCCACAATTATAACTCCAAGAGGCTCCGCAAAACC
AGAAAGAGTAGCCAATTTGAATGCCTGCCACTTGCTCTGTGTTGCAAAAT
AAACAGGAAGAGCAACAGCAACACCCTCAGGGATGTTGTGCAAAGCAATG
GCAACTGCCAAATTAAGGCCAACACGAAGGCCCTTCATTGATCCAAGAAA
TACGGCCATTCCCTCAGGAAAATTGTGCAAGCTTATGCCTACGGCTGTAA
TAATCCCACTAAAAAGAACTTGGCGACGATGCTTTTTCATAATGTCCTTA
CCCCCTTCATCCTTGTTTTTCTTTTTAC
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