CB290542

Overview
NameCB290542
Unique NameCB290542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12156 contig Csv1_Contig12156:280..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.963e-16
Identity = 55/148 (37.16%), Postives = 73/148 (49.32%), Query Frame = 3
Query:  156 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE---TPAAAPKSSVKANSQKSV-PKACLSPVQPS-LNQNFDYLNNSDQDYYNNVSILEEKPQVNQYGYLGSFPN--DGE 578
            +KS  R+R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T               RG KAK+NFP+     P     S   ++ +  V P +   P+ P  L   + +  +   D   N+S+       +   + G  PN  DGE
Sbjct:   61 EKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHIRVNPTQLYPSPATSHDRIIVTPPSPPPPIAPDILLDQYGHFQSRSSDSSANLSMNMLSSSSSSLNHQGLRPNLEDGE 206          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.759e-16
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  147 EQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSP 440
            +Q +   ++ R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+        +++ +++ + V ++  SP
Sbjct:   25 DQHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTTTI-SHAPRGVSESMNSP 121          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.153e-15
Identity = 43/80 (53.75%), Postives = 48/80 (60.00%), Query Frame = 3
Query:  123 GSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 362
            GS   K  E +  S ER +K  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               RG KAK+NFP+
Sbjct:   42 GSAVTKECESSM-SLERPKK--YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPE 118          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.506e-15
Identity = 41/109 (37.61%), Postives = 56/109 (51.38%), Query Frame = 3
Query:  177 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFDYLNNSDQDYYN 503
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+     +  +   +N    +    +    P+ NQ +   ++ D   +N
Sbjct:   86 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQLGSNSTYYSSNQIPQMEPQSI----PNYNQYYHDASSGDMLSFN 190          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.665e-14
Identity = 48/130 (36.92%), Postives = 61/130 (46.92%), Query Frame = 3
Query:  114 KSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPA-------AAPKSSVKANSQKSVPKACLSPVQPSLNQNFDYLNN 482
            KS G    + V      T RK+   +RG+RQRPWG+WAAEIRDPT+G RVWLGT++T              ++G  A  NFP  T A            SV     KS     LSP     + +F   +N
Sbjct:   76 KSIGDRKRRSVSPDSDVTRRKK---FRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTETETESVADGGDKSENDVALSPTSVLCDNDFAPFDN 202          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.844e-14
Identity = 49/132 (37.12%), Postives = 67/132 (50.76%), Query Frame = 3
Query:  162 STERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP-------DETPAAAPKSSVKANSQ----KSVPKACLSPVQPSLNQNFDY---------LNNSDQDY 497
            ST   R+  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T              +RG KAK NFP       +  P+A   ++  AN+Q    + +  A   PV PS + +  +         LN+   DY
Sbjct:    3 STTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSPLSLDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVPPSSDHHHQHHRIFLRTGVLNDKTSDY 134          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.263e-14
Identity = 43/110 (39.09%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  102 SAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP-DETPAAAPKSSVKANSQKSVPK 425
            S+   +  S  V+ V   KK+   +    YRG+R+RPWGK+AAEIRDP  KG R+WLGTF +              +RG+KA +NFP D     AP +S +   +  VP+
Sbjct:   78 SSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRKRRRTDVPQ 187          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.263e-14
Identity = 53/158 (33.54%), Postives = 76/158 (48.10%), Query Frame = 3
Query:  111 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAA------PKSSVKANSQKSVPKACLSPVQPSLNQNFDYLNNSDQDYYNNVSILEEKPQVNQYGYLGSFP 566
            R     + V  V  A  +T  ++K  +RG+RQRPWGKWAAEIRDP K VR+WLGT+NT              +RG  A  NF   TP  A      P S VK   +K+           S+++     ++S+    + VS+L     V+++  + S P
Sbjct:   98 RAVKSESTVSPVVSATTTTTGEKK--FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF-SVTPTTATEKKAPPPSPVKKKKKKNNKSKKSVTASSSISR-----SSSNDCLCSPVSVLRSPFAVDEFSGISSSP 247          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.079e-13
Identity = 54/141 (38.30%), Postives = 66/141 (46.81%), Query Frame = 3
Query:  102 SAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKA-CLSPVQP--SLNQNFDYLNNSDQDYYNNVSI 515
            S  RK         +  A  ST R     YRG+R+RPWG++AAEIRDP    R WLGTF+T               RG KA+ NF   T    P+     +++KS P A C  P  P  S  QNF Y   + Q  YN  SI
Sbjct:   33 SRNRKLSSKDTTVTIAGAGSSTTR-----YRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYPTAVIMPEPRFSFSNKKSSPSARCPLPSLPLDSSTQNF-YGAPAAQRIYNTQSI 167          
BLAST of CB290542 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.404e-13
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 3
Query:  150 QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQK 413
            +  K    + K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+T              +RG KA +NFP E     P++      +K
Sbjct:  143 EVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRADEGEKKRK 231          
The following BLAST results are available for this feature:
BLAST of CB290542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EF112_ARATH3.963e-1637.16Ethylene-responsive transcription factor ERF112 OS... [more]
EF113_ARATH6.759e-1639.80Ethylene-responsive transcription factor ERF113 OS... [more]
RAP26_ARATH1.153e-1553.75Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF114_ARATH1.506e-1537.61Ethylene-responsive transcription factor ERF114 OS... [more]
PTI6_SOLLC1.665e-1436.92Pathogenesis-related genes transcriptional activat... [more]
ERF81_ARATH4.844e-1437.12Ethylene-responsive transcription factor 12 OS=Ara... [more]
EF107_ARATH8.263e-1439.09Ethylene-responsive transcription factor ERF107 OS... [more]
CRF2_ARATH8.263e-1433.54Ethylene-responsive transcription factor CRF2 OS=A... [more]
ESR1_ARATH1.079e-1338.30Ethylene-responsive transcription factor ESR1 OS=A... [more]
EF102_ARATH2.404e-1343.82Ethylene-responsive transcription factor 5 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290542 ID=CB290542; Name=CB290542; organism=Citrus sinensis; type=EST; length=829bp
GTTTCCAAGGATTCAAGGACGATGAAGAAGAGTCTGACATTGATGGTGAC
GTGGACGTTGATGCCGACTTGATGATGGCTGATATTAAGCCTTTTACTTT
CTCAGCTGGTCGCAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAAC
AAGCTAAAAAATCCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATT
AGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAA
AGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTA
GGGCTTATGATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTT
AACTTTCCAGATGAAACTCCTGCTGCTGCTCCAAAGAGCTCAGTGAAGGC
AAACTCTCAGAAATCAGTTCCCAAAGCTTGCCTAAGCCCCGTGCAGCCAA
GTTTGAACCAGAACTTCGATTACTTGAACAACTCCGATCAGGATTACTAC
AACAATGTGAGTATTCTGGAGGAGAAACCACAAGTGAATCAGTATGGATA
TTTGGGCTCCTTCCCTAATGATGGAGAACTAGGATTCAAACCCTTTGTGC
CAACAGCTGATGATACTCCTTTGTACTTCAACTCTGACCAAGGCAGTAAC
TCCTTTGATTGTTCTGACTTTGGCTGGGGAGAACAGGCACCAAAGACTCC
TGAAATCTCATCTGTTTTGGAAGCTACCCCTGAAGTTGATGAATCTCAGT
TTGTGGATGCGGTTGCAAACCCGATGAAGAAGCTGAAATCTAACTCTGAG
AATGCTGTGCCTGTTCAGGATAACAATGG
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