CB290544

Overview
NameCB290544
Unique NameCB290544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:370..1245. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11
Identity = 41/96 (42.71%), Postives = 52/96 (54.17%), Query Frame = -2
Query:  603 KAVANH-PGSVAIEGGGMAFQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            +AVA H P S A E     F +Y  GI++     +    ++H V AVGYG E G  YWIVKNSWG +WG  GY  +ER         CG+A  AS+
Sbjct:  241 EAVALHNPVSFAFEVTA-DFMMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEEKGIPYWIVKNSWGPNWGMKGYFLIERG-----KNMCGLAACASF 330          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = -2
Query:  663 GSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM 854
            G VA+      +QLY  G+ +     SL+HGV  VG+       YWIVKNSWGSSWGE GYIR+
Sbjct:  260 GPVAVAVDATTWQLYFGGVVSLCLAWSLNHGVLIVGFNKNAKPPYWIVKNSWGSSWGEKGYIRL 323          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 46/124 (37.10%), Postives = 55/124 (44.35%), Query Frame = -2
Query:  603 PGSVAIEGGGMAFQLYESGIF-TGRCG-TSLDHGVTAVGYGTENGAD-------------------------------------YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 857
            P SVAI+    +FQLY SGI+   +C  T LDHGV  VGYG +   D                                     YWIVKNSWG+SWG  GYI M ++        CGIA  +SY
Sbjct:  254 PVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKD----RKNNCGIASVSSY 373          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = -2
Query:  663 GSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM 854
            G VA+      +QLY  G+ +     SL+HGV  VG+       YWIVKNSWGSSWGE GYIR+
Sbjct:  260 GPVAVAVDATTWQLYFGGVVSLCLAWSLNHGVLIVGFNKNAKPPYWIVKNSWGSSWGEKGYIRL 323          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 35/85 (41.18%), Postives = 45/85 (52.94%), Query Frame = -2
Query:  618 GSVAIEGGGMAFQLYESGIFTGRCG-TSLDHGVTAVGYGTEN-----GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIA 854
            G +AI    + +Q Y  G+F   C   SLDHG+  VGY  +N        YWIVKNSWG+ WGE GYI + R         CG++
Sbjct:  256 GPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRG-----KNTCGVS 335          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = -2
Query:  621 FQLYESGIFTGRCG-TSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 821
            F  YESG++    G     H V  VGYGT++ G DYWI+KNSWG  WGE GY R+ R     +T +CGI
Sbjct:  225 FMYYESGVYQHTYGRVEGGHAVDMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRIIR-----MTNECGI 288          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 32/83 (38.55%), Postives = 43/83 (51.81%), Query Frame = -2
Query:  606 GSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 854
            G VA+     ++  Y  G+ T      LDHGV  VGY       YWI+KNSW + WGE GYIR+ +      + +C +  EAS
Sbjct:  255 GPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKG-----SNQCLVKEEAS 332          
The following BLAST results are available for this feature:
BLAST of CB290544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
CATH_BOVIN5.460e-1142.71Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
LMCPA_LEIME7.131e-1150.00Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CYSP2_DICDI7.131e-1137.10Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
CYSP1_LEIPI7.131e-1150.00Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CYSP1_DICDI7.131e-1141.18Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CATB3_GIALA7.131e-1149.28Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]
CYSP_TRYCR9.313e-1138.55Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cb07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290544 ID=CB290544; Name=CB290544; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTTAGATAACAACAATTTGTTTGTGCATTGCCCTTT
ATTCAACGCAGATAGATAACTTACAACGCTATATACCCAACCAACGTCCG
AATAAATATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAAT
GAAATGCAGTAGAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCAC
GAATATTTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACT
ATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGT
TTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCT
CATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGC
AGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCAT
CCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTT
GCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTG
GAGATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATG
GGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGC
CACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAGCTACTGCCCC
ATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGTGCCATATCCA
ACAGCAGTAACACCATGGTCCAGAGATGTCCCACATCTTCCCGTAAATAT
ACCCGATTCATATAACTGGAATGCCATGCCACCTCCTTCAATGGCAACAC
TCCCGGGGTGATTTGCAACTGCCTTT
back to top