CB290544

Overview
NameCB290544
Unique NameCB290544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:370..1245. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.171e-19
Identity = 51/86 (59.30%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  618 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIA 875
            +AVA  P +VAI+     FQ Y SGIF+G CGT L+HGVT VGY     A+YWIV+NSWG  WGE GYIRM R V G   G CGIA
Sbjct:  121 QAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY----QANYWIVRNSWGRYWGEKGYIRMLR-VGG--CGLCGIA 199          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.703e-18
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  603 AVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 872
            ++AN P SV +E  G  FQLY  GIF G CG  +DH V AVGY    G +Y ++KNSWG+ WGE GYIR++R   G   G CG+   + Y
Sbjct:  257 SIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWGTGWGENGYIRIKRG-TGNSYGVCGLYTSSFY 341          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.531e-18
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = -2
Query:  603 KAVANH-PGSVAIEGGGMAFQLYESGIFTG-RCGT-SLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            KAVA   P SVAI+    +FQLY  G++    C   +LDHGV  VGYGT E+G DYW+VKNSWG++WGE GYI+M RN       +CGIA  +SY
Sbjct:  246 KAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDHGVLVVGYGTDESGMDYWLVKNSWGTTWGEQGYIKMARN----QNNQCGIATASSY 336          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.022e-18
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = -2
Query:  621 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 875
            +A+AN P SV  +  G  FQ Y+ GI+ G CGT+ DH VTAVGY    G  Y ++KNSWG +WGE GYIR++R  +G   G CG+
Sbjct:  123 QAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGY----GKTYLLLKNSWGPNWGEKGYIRIKR-ASGRSKGTCGV 202          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.866e-18
Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  603 PGSVAIEGGGMAFQLYESGIF-TGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 857
            P SV I+    +FQ Y SG++    C  S LDH V AVGYG+E G D+W+VKNSW +SWG+AGYI+M RN        CGIA  ASY
Sbjct:  238 PISVTIDAAHSSFQFYSSGVYYEPSCSPSYLDHAVLAVGYGSEGGQDFWLVKNSWATSWGDAGYIKMSRN----RNNNCGIATVASY 320          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.752e-17
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = -2
Query:  603 PGSVAIEGGGMAFQLYESGIF-TGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 857
            P SVAI+    +FQ Y +G++    C +S LDH V AVGYG+E G D+W+VKNSW +SWGE+GYI+M RN        CGIA +A Y
Sbjct:  237 PISVAIDASHRSFQSYYTGVYYEPSCSSSQLDHAVLAVGYGSEGGQDFWLVKNSWATSWGESGYIKMARN----RNNNCGIATDACY 319          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.989e-17
Identity = 50/94 (53.19%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  603 KAVAN-HPGSVAIEGGGMAFQLYESGIF-TGRCGTS-LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            KAVA+  P SVAI+ G  +FQ Y+SGI+    C +  LDHGV  VGYG E G  YWIVKNSWG  WG+ GYI M ++        CGIA  ASY
Sbjct:  126 KAVASVGPVSVAIDAGHSSFQFYQSGIYYEPDCSSEDLDHGVLVVGYGFEGGKKYWIVKNSWGEKWGDKGYIYMAKD----RKNHCGIATAASY 215          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.098e-17
Identity = 48/92 (52.17%), Postives = 59/92 (64.13%), Query Frame = -2
Query:  603 AVANHPGSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 872
            A+  +P SVAI+    +FQLY +G++     +S  LDHGV AVG GT+NG DY+IVKNSWG SWG  GYI M RN        CGI+  ASY
Sbjct:  247 ALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLNGYIHMARN----KDNNCGISTMASY 334          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.696e-17
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = -2
Query:  603 AVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 872
            AV+  P +VA++     FQ Y+SG+F G CGTSL+H VTA+GY    G D  I    WG+ WGEAGYIRM R+V+ + +G CGIA++  Y
Sbjct:  124 AVSKQPITVAVDANAN-FQYYKSGVFNGPCGTSLNHAVTAIGY----GQDSIIYPKKWGAKWGEAGYIRMARDVSSS-SGICGIAIDPLY 207          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.136e-16
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = -2
Query:  603 KAVANH-PGSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            +AVAN  P SVAI+    +F LY SG++    C  +++HGV  VGYG  NG DYW+VKNSWG ++G+ GYIRM RN        CGIA   SY
Sbjct:  240 EAVANKGPVSVAIDASHYSFFLYRSGVYYEPSCTQNVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDQGYIRMARNSG----NHCGIASYPSY 328          
The following BLAST results are available for this feature:
BLAST of CB290544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
ERVC_TABDI4.171e-1959.30Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]
PAPA1_CARPA2.703e-1848.89Papain OS=Carica papaya PE=1 SV=1[more]
CATL_SARPE3.531e-1853.68Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
MEX1_JACME6.022e-1850.59Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CYSP2_HOMAM7.866e-1852.87Digestive cysteine proteinase 2 OS=Homarus america... [more]
CYSP1_HOMAM1.752e-1751.72Digestive cysteine proteinase 1 OS=Homarus america... [more]
CATL1_CHICK2.989e-1753.19Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CYSP3_DICDI5.098e-1752.17Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
BROM2_ANACO8.696e-1750.00Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CATS_CANFA1.136e-1650.54Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290544 ID=CB290544; Name=CB290544; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTTAGATAACAACAATTTGTTTGTGCATTGCCCTTT
ATTCAACGCAGATAGATAACTTACAACGCTATATACCCAACCAACGTCCG
AATAAATATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAAT
GAAATGCAGTAGAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCAC
GAATATTTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACT
ATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGT
TTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCT
CATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGC
AGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCAT
CCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTT
GCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTG
GAGATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATG
GGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGC
CACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAGCTACTGCCCC
ATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGTGCCATATCCA
ACAGCAGTAACACCATGGTCCAGAGATGTCCCACATCTTCCCGTAAATAT
ACCCGATTCATATAACTGGAATGCCATGCCACCTCCTTCAATGGCAACAC
TCCCGGGGTGATTTGCAACTGCCTTT
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