CB290544

Overview
NameCB290544
Unique NameCB290544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.637e-16
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = -2
Query:  621 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 875
            + + N P SV  E  G AFQLY+ GIF G CG   DH VTA+GYG     D    KNSWG +WGE GYI+++R  +G   G CG+
Sbjct:  124 QGIGNQPVSVLHESKGRAFQLYKGGIFNGPCGYKNDHAVTAIGYGKAQLLD----KNSWGPNWGEKGYIKIKR-ASGKSEGTCGV 203          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.637e-16
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = -2
Query:  603 PGSVAIEGGGMAFQLYESGIFTG-RCGT-SLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 857
            P SVAI+    +FQ Y  G++   +C   +LDHGV  VG+GT E+G DYW+VKNSWG++WG+ G+I+M RN       +CGIA  +SY
Sbjct:  285 PVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRN----KENQCGIASASSY 368          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = -2
Query:  603 KAVANH-PGSVAIEGGGMAFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            +AVAN  P  V ++    +F LY SG++    C   ++HGV  +GYG  NG +YW+VKNSWGS++GE GYIRM RN        CGIA   SY
Sbjct:  239 EAVANKGPVCVGVDASHPSFFLYRSGVYYDPACTQKVNHGVLVIGYGDLNGKEYWLVKNSWGSNFGEQGYIRMARNKG----NHCGIASYPSY 327          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = -2
Query:  606 ANHPGSVAIEGGGMAFQLYESGIFTGRCGTSL--DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 866
            A  P +VA++     F +Y SGI+  +  + L  +H V AVGYGT+ G DYWIVKNSWG+ WGE GYIRM RN        CGIA  AS
Sbjct:  235 ARRPAAVAVDVES-DFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGYIRMARNRG----NMCGIASLAS 318          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.640e-15
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = -2
Query:  603 KAVANH-PGSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            +AVAN  P SV ++    +F LY SG++    C  +++HGV  VGYG  NG +YW+VKNSWG ++GE GYIRM RN        CGIA   SY
Sbjct:  240 EAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG----NHCGIASFPSY 328          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.142e-15
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = -2
Query:  603 FQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 821
            F++Y+SG++T   CGTS   ++H V AVGYG ENG  YW++KNSWG+ WG+ GY +ME          CGIA  ASY
Sbjct:  287 FRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMG-----KNMCGIATCASY 358          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.142e-15
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = -2
Query:  603 KAVANHPGSVAIEGGGMAFQLYESGIFTGRCGTSL-DHGVTAVGYGTENG-ADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            KAVA  P SV I    M+   Y+SG++ G C     DH V  VGYGT +   DYW+++NSWG  WGE GY+R++RN     TGKC +A+   Y
Sbjct:  255 KAVAYQPISVMISAANMSD--YKSGVYKGACSNLWGDHNVLIVGYGTSSDEGDYWLIRNSWGPEWGEGGYLRLQRNFHEP-TGKCAVAVAPVY 344          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.798e-15
Identity = 45/93 (48.39%), Postives = 56/93 (60.22%), Query Frame = -2
Query:  603 AVANHPGSVAIEGGGMAFQLYESGIFTGRCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 872
            A+   P SV+I+     F LY  GI+ G   TS   ++H V  VGYG+ +G DYWI KNSWG  WGE GYI ++RN  G L G CG+   ASY
Sbjct:  265 AILEQPISVSIDAKD--FHLYTGGIYDGENCTSPYGINHFVLLVGYGSADGVDYWIAKNSWGFDWGEDGYIWIQRN-TGNLLGVCGMNYFASY 354          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.654e-15
Identity = 50/111 (45.05%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  603 AVANHPGSVAIEGGGMAFQLYESGIF-TGRCGT-SLDHGVTAVGYGTENGA-------------------DYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 872
            AV  +P SVAI+    +FQLY SGI+    C + +LDHGV AVGYG+ +G+                   +YWIVKNSWG+SWG  GYI M RN        CGIA  AS+
Sbjct:  235 AVNVNPVSVAIDASHQSFQLYTSGIYYEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLSASSSNEYWIVKNSWGTSWGIEGYILMSRN----RDNNCGIASSASF 341          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = -2
Query:  603 PGSVAIEGGGMAFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 857
            P SV I+    +F  Y+SG++    C  +++HGV  VGYGT +G DYW+VKNSWG ++G+ GYIRM RN        CGIA   SY
Sbjct:  256 PVSVGIDASHSSFFFYKSGVYDDPSCTGNVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARN----NKNHCGIASYCSY 337          
The following BLAST results are available for this feature:
BLAST of CB290544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
MEX2_JACME5.637e-1649.41Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATL_DROME5.637e-1648.86Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CATS_SAIBB1.256e-1547.31Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATLL_FASHE1.256e-1550.56Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CATS_HUMAN1.640e-1548.39Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
ORYC_ORYSJ2.142e-1550.65Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CPR2_ARATH2.142e-1546.24Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
P34_SOYBN2.798e-1548.39P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
CYSP5_DICDI3.654e-1545.05Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
CATS_MOUSE4.772e-1547.67Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01cb07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290544 ID=CB290544; Name=CB290544; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTTAGATAACAACAATTTGTTTGTGCATTGCCCTTT
ATTCAACGCAGATAGATAACTTACAACGCTATATACCCAACCAACGTCCG
AATAAATATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAAT
GAAATGCAGTAGAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCAC
GAATATTTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACT
ATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGT
TTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCT
CATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGC
AGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCAT
CCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTT
GCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTG
GAGATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATG
GGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGC
CACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAGCTACTGCCCC
ATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGTGCCATATCCA
ACAGCAGTAACACCATGGTCCAGAGATGTCCCACATCTTCCCGTAAATAT
ACCCGATTCATATAACTGGAATGCCATGCCACCTCCTTCAATGGCAACAC
TCCCGGGGTGATTTGCAACTGCCTTT
back to top