CB290544

Overview
NameCB290544
Unique NameCB290544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:370..1245. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATK_MACFA (Cathepsin K OS=Macaca fascicularis GN=CTSK PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13
Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = -2
Query:  603 PGSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 857
            P SVAI+    +FQ Y  G++      S  L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+
Sbjct:  244 PVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASF 326          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATK_HUMAN (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13
Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = -2
Query:  603 PGSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 857
            P SVAI+    +FQ Y  G++      S  L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+
Sbjct:  244 PVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASF 326          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.535e-13
Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = -2
Query:  603 GMAFQLYESGIF--TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 830
            G   + Y  GIF  +   G +L HGV  VGYG ENG  YWI+KN+WG+ WGE+GYIR+ R+        CG+   ASY
Sbjct:  247 GKPMKSYGGGIFDDSSCLGDNLHHGVNVVGYGIENGQKYWIIKNTWGADWGESGYIRLIRDT----DHSCGVEKMASY 320          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.535e-13
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  603 PGSVAIEGGGMAFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 857
            P SVAI+    +FQ Y  G++    C + +L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+
Sbjct:  245 PISVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASF 327          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATK_BOVIN (Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.535e-13
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  603 PGSVAIEGGGMAFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 857
            P SVAI+    +FQ Y  G++    C + +L+H V AVGYG + G  +WI+KNSWG +WG  GYI M RN        CGIA  AS+
Sbjct:  244 PISVAIDASLTSFQFYRKGVYYDENCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARN----KNNACGIANLASF 326          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.005e-13
Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = -2
Query:  603 PGSVAIEGGGMAFQLYESGIFT-GRCGTSLDHGVTAVGYGTENG-ADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 857
            P  V I G   +F+ Y+ G+++ G CG   DH V AVGYGT     DYWIVKNSWG+ WG+ GY+ M RN        C IA  AS+
Sbjct:  312 PVVVGISGSKRSFRFYKDGVYSEGNCGRP-DHAVLAVGYGTHPSYGDYWIVKNSWGTDWGKDGYVYMARNRG----NMCHIASAASF 393          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATL1_HUMAN (Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.833e-13
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = -2
Query:  603 KAVAN-HPGSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTENGAD----YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            KAVA   P SVAI+ G  +F  Y+ GI F   C +  +DHGV  VGYG E+       YW+VKNSWG  WG  GY++M ++        CGIA  ASY
Sbjct:  237 KAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKD----RRNHCGIASAASY 330          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.950e-13
Identity = 46/98 (46.94%), Postives = 56/98 (57.14%), Query Frame = -2
Query:  603 KAVAN-HPGSVAIEGGGMAFQLYESGIF-TGRCGT-SLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 875
            KAVA   P SVA++    + Q Y SGI+    C + +LDHGV  VGYG E    N   YW+VKNSWGS WG  GYI+    +A      CG+A  ASY
Sbjct:  237 KAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYGYEGTDSNKNKYWLVKNSWGSEWGMEGYIK----IAKDRDNHCGLATAASY 330          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.950e-13
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = -2
Query:  603 PGSVAIEGGGMAFQLYESGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 857
            P SV+I+    +FQ Y  G++    C   +++H V  VGYGT+ G  YWI+KNSWG SWG  GY+ + RN        CGI   AS+
Sbjct:  244 PVSVSIDASLTSFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQKGNKYWIIKNSWGESWGNKGYVLLARN----KNNACGITNLASF 326          
BLAST of CB290544 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.300e-12
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = -2
Query:  603 FQLYESGIFTGR-CGTSLD---HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 821
            F +Y+SG+++ + C  + D   H V AVGYG +NG  YWIVKNSWGS WGE GY  +ER         CG+A  ASY
Sbjct:  257 FLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIERG-----KNMCGLAACASY 328          
The following BLAST results are available for this feature:
BLAST of CB290544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
CATK_MACFA1.175e-1345.98Cathepsin K OS=Macaca fascicularis GN=CTSK PE=2 SV... [more]
CATK_HUMAN1.175e-1345.98Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
CATLL_PHACE1.535e-1347.44Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
CATK_CANFA1.535e-1345.98Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]
CATK_BOVIN1.535e-1345.98Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2[more]
CATL_BRUPA2.005e-1347.13Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
CATL1_HUMAN5.833e-1345.92Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2[more]
CATL1_MOUSE9.950e-1346.94Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
CATK_RAT9.950e-1342.53Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
CATH_MOUSE1.300e-1249.35Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290544 ID=CB290544; Name=CB290544; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTTAGATAACAACAATTTGTTTGTGCATTGCCCTTT
ATTCAACGCAGATAGATAACTTACAACGCTATATACCCAACCAACGTCCG
AATAAATATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAAT
GAAATGCAGTAGAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCAC
GAATATTTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACT
ATAATTAAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGT
TTAGCAGGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCT
CATCAAGCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGC
AGCAGCTATAGGGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCAT
CCCCATGCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTT
GCTCTCAGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTG
GAGATGGAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATG
GGATATGAGGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGC
CACGTTACGCTCCATCCTAATATAGCCAGCCTCTCCCCAGCTACTGCCCC
ATGAATTCTTCACAATCCAGTAATCAGCTCCATTTTCTGTGCCATATCCA
ACAGCAGTAACACCATGGTCCAGAGATGTCCCACATCTTCCCGTAAATAT
ACCCGATTCATATAACTGGAATGCCATGCCACCTCCTTCAATGGCAACAC
TCCCGGGGTGATTTGCAACTGCCTTT
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