CB290545

Overview
NameCB290545
Unique NameCB290545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.363e-17
Identity = 62/214 (28.97%), Postives = 102/214 (47.66%), Query Frame = 2
Query:  113 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHL--GARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQ 748
            FE +     K Y  + E+E   + F E+L++++ +       K  +N  +DL+ +E+++ +L     F   +T                 +P  +D R    V  ++ QG CGSCWAFS +AA E        + + LSEQELVDC + +  GC+G  +    E+I  NG ++ E  YPY A +  C   R N++   I +Y  +   D K ++
Sbjct:   26 FEEFKKAFNKNYATVEEEEVARKNFLESLKYVEAN-------KGAINHLSDLSLDEFKNRYLMSAEAFEQLKTQFDLNAETSACRINSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQH--GCHGDTIPRGIEYIQQNGVVE-ERSYPYVAREQRC--RRPNSQHYGISNYCQIYPPDVKQIR 227          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.507e-16
Identity = 60/214 (28.04%), Postives = 99/214 (46.26%), Query Frame = 2
Query:  113 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHL--GARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQ 748
            FE +     K Y    ++E   + F E+L++++ +       K  +N  +DL+ +E+++  L     F   +T                +LP  +D R    V  ++ QG CGSCWAFS +A+ E          + L+EQELVDC  +   GC+G  +    E+I  NG +  E  YPY A + SC  +R NA+   + +Y  +   D   ++
Sbjct:   26 FEEFKKAFNKTYATPEKEEVARKNFLESLKYVESN-------KGAINHLSDLSLDEFKNQFLMNANAFEQLKTQFDLNAETYACSINSVSLPSELDLRSLRTVTPIRMQGGCGSCWAFSGVASTESAYLAYRNMSLDLAEQELVDC--ASQNGCHGDTIPRGIEYIQQNGVVQ-EHYYPYVAREQSC--HRPNAQRYGLKNYCQISPPDSNKIR 227          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: PEPT1_DERPT (Peptidase 1 OS=Dermatophagoides pteronyssinus GN=DERP1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15
Identity = 59/202 (29.21%), Postives = 94/202 (46.53%), Query Frame = 2
Query:  113 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHL--GARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDY 712
            FE +     K+Y    ++E   + F E+++++  +          +N  +DL+ +E+++  L     F   +T              G A P  +D R+   V  ++ QG CGSCWAFS +AA E          + L+EQELVDC + +  GC+G  +    E+I  NG +  E  Y Y A + SC   R NA+   I +Y
Sbjct:   26 FEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG-------AINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNA-PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQH--GCHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSC--RRPNAQRFGISNY 214          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CYSP3_CARCN (Cysteine proteinase 3 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 2
Query:  380 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG 505
            P+S+DWRKKGAV  VK+QGSCGSCWAFSTIA VEGINKIV G
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIATVEGINKIVHG 43          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CYSP4_CARCN (Cysteine proteinase 4 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 2
Query:  380 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG 505
            P+S+DWRKKGAV  VK+QGSCGSCWAFSTI  VEGINKI TG
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIVTVEGINKIRTG 43          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CYSP2_CARCN (Cysteine proteinase 2 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.194e-13
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 2
Query:  380 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG 505
            P SVDWR+KGAV  VKDQ  CGSCWAFST+A VEGINKIVTG
Sbjct:    2 PGSVDWRQKGAVTPVKDQNPCGSCWAFSTVATVEGINKIVTG 43          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 57/186 (30.65%), Postives = 91/186 (48.92%), Query Frame = 2
Query:  221 SENRTYKVGL-NRFADLTNEEYRSMHLGARF--GAKRTSLKSKRSNRYLPRVGEALPDSVDWRKK--GAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG---SLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKA----IDGSCDTY----RKNAKVVTIDDYEDVPLN 730
            S N  +K G+  RF  LT +E  S+ +   F   AK  + +   +++      + +P+S D+R++    + EV DQG CGSCWAFS++A   G  + V G     +  S Q +V CD   +  CNGG +   ++F+    G  T+E  PYK+    + G+C T          + T   Y+D  L+
Sbjct:   26 SLNPRWKAGIPKRFEGLTKDEISSLLMPVSFLKNAKGAAPRGTFTDK------DDVPESFDFREEYPHCIPEVVDQGGCGSCWAFSSVATF-GDRRCVAGLDKKPVKYSPQYVVSCDHG-DMACNGGWLPNVWKFLTKT-GTTTDECVPYKSGSTTLRGTCPTKCADGSSKVHLATATSYKDYGLD 202          
BLAST of CB290545 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11
Identity = 54/164 (32.93%), Postives = 79/164 (48.17%), Query Frame = 2
Query:  221 SENRTYKVGL-NRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPR---VGEALPDSVDWRKK--GAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTG---SLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKA----IDGSCDT 673
            S N  +K G+  RF  LT +E  S+ +   F         KR    +PR        PDS D+R++    + EV DQG CGSCWAFS++A+V G  +   G     +  S Q +V CD   +  C+GG +   + F+    G  T+E  PY++      G+C T
Sbjct:   26 SLNPRWKAGIPKRFEGLTKDEISSLLMPVSF--------LKRDRAAVPRGTVSATQAPDSFDFREEYPHCIPEVVDQGGCGSCWAFSSVASV-GDRRCFAGLDKKAVKYSPQYVVSCDRG-DMACDGGWLPSVWRFLTKT-GTTTDECVPYQSGSTGARGTCPT 178          
The following BLAST results are available for this feature:
BLAST of CB290545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
PEPT1_DERFA1.363e-1728.97Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
PEPT1_EURMA1.507e-1628.04Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]
PEPT1_DERPT1.276e-1529.21Peptidase 1 OS=Dermatophagoides pteronyssinus GN=D... [more]
CYSP3_CARCN2.406e-1483.33Cysteine proteinase 3 (Fragment) OS=Carica candama... [more]
CYSP4_CARCN7.001e-1480.95Cysteine proteinase 4 (Fragment) OS=Carica candama... [more]
CYSP2_CARCN1.194e-1380.95Cysteine proteinase 2 (Fragment) OS=Carica candama... [more]
CATB2_GIALA1.907e-1130.65Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]
CATB3_GIALA5.547e-1132.93Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cb07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290545 ID=CB290545; Name=CB290545; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTT
ATGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAG
GTTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAA
CGCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTA
GGTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTG
AACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGG
TGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACC
GTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGG
AAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTG
CTGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTA
CAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACA
TCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTT
CATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTACAAAG
CCATTGATGGTAGCTGTGACACATATCGGAAAAATGCCAAAGTAGTTACA
ATTGATGACTATGAAGATGTTCCCCTAAATGACGAGAAAGCTTTGCAAAA
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